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A bacterial toolkit for plants
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Products
… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, Biodesign and pathway engineering Mass spectrometry based metabolomics Below is a … in various combinations and cloned into a vector of choice; up to 210,000 variants can be made Pool of variant …
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Party in the Rhizosphere
… There’s a party in the soil, and microbes are the VIPs. They’re feasting on the compounds that plants secrete through their roots, creating a lively zone called the rhizosphere. In this episode, …
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Uncovering Novel Genomes from Earth’s Microbiomes
… samples around the world, expanding the known diversity of bacteria and archaea by 44%, is now available and  described … as the GEM (Genomes from Earth’s Microbiomes) catalog, this work results from a collaboration involving more than 200 … scientist in Nikos Kyrpides’  Microbiome Data Science group. “What makes this study really stand out from previous …
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A Shrubbier Version of Rubber
… one tree species: Hevea brasiliensis . It’s great at producing latex that becomes rubber, but it’s vulnerable to disease and climate shifts. So researchers are looking into a desert shrub that’s native to North America: …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha Institute for … spans 15 years and involves more than 17 research groups. The team set out to characterize the transcriptome – …
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Trent Northen
… is currently a Senior Staff Scientist at Berkeley Lab. Since joining Berkeley Lab in 2008, Dr. Northen has had leadership … to learn more about the program's areas of focus, major initiatives and more.  … B.S. in Chemical Engineering, University of California Santa …
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THE Bioenergy Tree
… Energy’s favorite tree is poplar. They’re the fastest growing trees in the Northern Hemisphere, making them tantalizing plants to harness for bioenergy. In …
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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of … other crops for biofuels and bioproducts. Historically, work on sorghum has focused on producing high-quality … States Agency for International Development (USAID) also supported the work.   Publication:  Morris, G.P., Harder, …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… and new technology developments – has advanced their work on the world’s most pressing energy and environment … forward these techniques and, and making all kinds of super interesting contributions.” Learn more about Bruce … actually quite significant knowing that there’s one billion bacteria in a teaspoon of soil.” She added that overall, …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… in both genome content and structure following a genome duplication event that occured some 60 million years ago. … duplications, and even more ancient gene transfers from bacteria have all armed the plant with an array of defense … tree of life. Ultimately, the resulting comparative framework can inform the efficient production of plant-based …
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Aerobic bacterial methane synthesis
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