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Animal-associated jumbo phages as widespread and active modulators of gut microbiome ecology and metabolism
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JGI Early Career Researchers Featured in mSystems Special Issue
… In a special issue of mSystems , out May 14, 2019, JGI researchers are among the authors who offer … processes. A third approach steps away from reconstructing genomes directly from the environment and focuses on … sequence reads to link mobile elements such as plasmids to microbial host cells. In a separate article, research …
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Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses
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High functional diversity among Nitrospira populations that dominate rotating biological contactor microbial communities in a municipal wastewater treatment plant
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A Community Resource for Secondary Metabolite Researchers
… a secondary metabolites portal within the Integrated Microbial Genomes and Microbiomes (IMG/M) system known as IMG-ABC. … of Energy Joint Genome Institute (https:// ror.org/04xm1d337), a DOE Office of Science User Facility, is …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a close relative and model … on two types of naturally occurring switchgrass, those with 4 copies of the genome (4X) and those with eight copies … switchgrass has become an important species whose complex genomes are helping breeders understand how they can boost …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… across the species. These are primarily tetraploids (4X or four copies of the genome) and octoploids (8X or eight copies of the genome). Lovell et al. focused on the 4X variety, largely because it’s been prioritized in … After our team finished analyzing the diversity present in 4X switchgrass, we were surprised by the number of 8X …
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Predominant Acidilobus-Like Populations from Geothermal Environments in Yellowstone National Park Exhibit Similar Metabolic Potential in Different Hypoxic Microbial Communities
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Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
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When “The Blob” Made It Hotter Under the Water
… event may foreshadow climate change impact on marine microbial communities. The Science A team of researchers … Blob.” The event was recorded during a long-term study of microbial communities in the northeastern subarctic Pacific Ocean. The Impact The microbial communities in the ocean drive the biological pump …
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Matthew Kellom
… Matt is broadly interested in the interactions between microbial life and environment, and using metagenomics to study these complex natural systems. Microbial communities living in hard-to-reach places that …
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Statement on the Use of Genomics Data
… or the publication date, whichever comes first. For nearly 40 years, the International Nucleotide Sequence Database …
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