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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Computational Sieves to Filter Sequences There are more microbes on the planet than particles in a handful of dirt, and viruses vastly outnumber the microbes. Advances in sequencing technologies and … one of the project co-leads and first author of the study. Members of the Tel Aviv and NCBI teams, who were …
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SPRUCE-ing Up Science
Human Genome Project, or computational biologists who were contributing to cutting edge developments in machine … slides and anticipating the inevitable questions about the study’s methods and analysis, Lawrence is spending time on …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… and metabolism, work on which she is expanding with her study of microbes in California’s manmade water transport canals. …
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Genomic Characterization of Candidate Division LCP-89 Reveals an Atypical Cell Wall Structure, Microcompartment Production, and Dual Respiratory and Fermentative Capacities.
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Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
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The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry
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Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network
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Transcriptomics reveal a mechanism of niche defense: two beneficial root endophytes deploy an antimicrobial GH18‐CBM5 chitinase to protect their hosts
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… from individual environmental cells. The proof of principle study built off earlier approaches and offered a way for researchers to study the planet’s microbial diversity, much of which … green sharpshooter. In 2012, single cells isolated from the microbes found in the oil plume from Deepwater Horizon oil …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… (Berkeley Lab), to fill in these gaps of knowledge. In a study published November 11, 2022, in Cell Genomics , the … of branches,” said Natalia Ivanova, senior author of the study and head of the JGI’s Microbiome Annotation Group. … from sequenced environmental samples in a previous study. The team analyzed over 80,000 biosynthetic gene …
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Hiroshi Otani
… the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in microbes, particularly actinomycetes. His research activity … particularly interested in understanding how, when and why microbes decide to produce which metabolites. … BS, …
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The draft genome sequence of the ascomycete fungus Penicillium subrubescens reveals a highly enriched content of plant biomass related CAZymes compared to related fungi
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