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DAS Tool for Genome Reconstruction from Metagenomes
… to high (596 genomes) complexity. The environmental datasets included metagenomic data from Crystal Geyser in Utah (work also done by the Banfield lab in collaboration with the JGI), human microbiomes, natural oil seeps in Santa Barbara, Calif., and …
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CSP Functional Genomics
… for scientific merit, DOE mission relevance , proposed data usage by the applicant/community, and track record of …
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High quality draft genome sequence of the slightly halophilic bacterium Halomonas zhanjiangensis type strain JSM 078169T (DSM 21076T) from a sea urchin in southern China
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… to make sure the goals, experimental design, and plan for data utilization are clear. Contact JGI staff for feedback … a proposal. Describe in detail what you will do with the data! Ideally, you or someone on your team will have … exploring how KBase (www.kbase.us) can support biological data analysis. It is a free, open source analytics platform …
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JGI at the AGU Fall Meeting
… Lab (short talk): “How do we make interdisciplinary sample data more FAIR?” December 16 7:55am, Convention Center Rm … “EMSL’s 1000 Soils Project: core collection strategy and data types available” December 17  6:40am Convention Center … Weisenhorn, KBase at Argonne (lightning talk): “Applying Data Standards and Reproducible Workflows To Advance Earth …
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Bacterial response to the 2021 Orange County, California, oil spill was episodic but subtle relative to natural fluctuations.
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High quality draft genome sequences of Pseudomonas fulva DSM 17717T, Pseudomonas parafulva DSM 17004T and Pseudomonas cremoricolorata DSM 17059T type strains
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Supercharging SIP in the Fungal Hyphosphere
… with results published in the  November 2022 issue of Microbiome . High-throughput stable isotope probing (SIP) …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… find genetic regions of interest.” The combination of field data and genetic information has allowed the research team … cutting-edge genomics and genetic analysis with large scale data collection,” he added. Jeremy Schmutz , head of the  … is direct evidence of climatic adaptation. The team’s database of genes that underlie adaptation to climate …
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Computationally Classifying Fungal Lifestyles
… of fungi, by lifestyles. The machine “learned” to identify data generated in part through the 1000 Fungal Genomes … fungal lifestyles of saprobes and pathogens based on the data provided. In this proof of concept test, the team … S et al.  Studies in Mycology , 2020.) Using whole genome data from newly sequenced genomes, they also built a …
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Annual Genomics of Energy & Environment Meeting
… infrastructure – DNA sequencing, synthesis, metabolomics, data analysis, and new technology developments – that the …
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The fungus that made itself at home
… Serpula lacrymans on MycoCosm Data portal … Serpula humantioides on MycoCosm Data portal … Datasets … Datasets …
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