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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are close to … general, work. KAROLINA:  We all know plants take up water through their roots. But for them to be able to pull that …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism between some archaeal hosts and their hitchhikers. The Science Within the archaeal … in part by the Allen Distinguished Investigator Program, through The Paul G. Allen Frontiers Group, the National …
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Mindfully Moving JGI
JGI is in the process of shifting its operations from Walnut Creek … at maximum) maintained by a workforce that numbered more than 100 at its peak, all the machines were switched off. Over … JGI’s operations). At the JGI, that translated to sorting through the stuff accumulated in offices, labs, lockers, and …
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Len Pennacchio
In 2003, Dr. Pennacchio joined the DOE Joint Genome … and mouse triglyceride metabolism. He is funded by DOE and through continued competitive grant support from NIH. … BA … technical JGI directions for DOE User science. … Complete Publications Genomic Technologies Program Defining the vast …
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Access to Rock Star Scientists
Through the JGI-UC Merced Genomics Internship, graduate students Candace Cole, Mo Kaze, Akshay Paropkari, Vicente Ramirez and …
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Effects of Polar Light Cycle on Microbial Food Web
… change with the seasons. The Science Light-harvesting bacteria (phototrophs) in Antarctica’s Ace Lake defy the … when sunlight becomes scant, Ace Lake’s bacteria instead go through a boom and bust cycle aligned with light … for metagenomic sequencing. A study  recently published in  Microbiome shows that the way nutrients flow through the …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … study subject that could lead to more sustainable energy production.  However, less than 10% of the microbes found in …
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Finding the Fermenters
Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative … phenotype and genotype of fermentative prokaryotes on IMG … Publication … Datasets … Datasets … Datasets …
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An Automated Tool for Assessing Virus Data Quality
… virus sequence fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, … scientist Stephen Nayfach, the study’s first author in the Microbiome Data Science group led by Nikos Kyrpides. To …
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Party in the Rhizosphere
There’s a party in the soil, and microbes are the VIPs. They’re feasting on the compounds that plants secrete through their roots, creating a lively zone called the …
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JGI at the AGU Fall Meeting
This year the AGU Fall Meeting, with the theme “Science is Society,” hosts sessions in New Orleans and online. Register for the meeting here. Here are some … allows scientists access to multiple user facilities through a single research proposal: Maximize Your Research …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of microorganisms live among viruses that infect them. But what trends … that eschew culturing, painting a more systematic picture through single-cell and metagenomic sequencing. A team …
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