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10 From JGI on the 2019 Highly Cited Researchers List
… Clarivate Analytics, formerly the IP & Science arm of Thomson Reuters, has released their 2019 list of Highly … with a community of switchgrass researchers to conduct a large-scale field experiment to uncover the genetic basis of … of a team that presented the first large analysis of an Aspergillus fungal subgroup, section Nigri. Aspergillus …
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Massie S. Ballon
… and outreach efforts, the team aims to broaden awareness of and access to JGI public resources and the DOE mission, as well as help cultivate the next generation of genomic research users, partners, and collaborators.  Ms. … manager for over a decade. Her portfolio spans a wide range of topics beyond translating science, including crafting …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … with the HudsonAlpha Institute for Biotechnology.   Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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Forming Scientific Connections and Building Community
… The 11th cohort of JGI-UC Merced interns pick highlights from their summer experiences. This year the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … biosynthetic gene cluster annotation by leveraging a large genomic model ” Leonel Gonzalez : “It’s been great …
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JGI@25: Studying Sorghum’s Survival Skills
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… Ancient  Chloroflexota s ditched their flagella and other traits when … place: hot spring-dwelling bacteria from the phylum C hloroflexota . Research shows that flagella were lost in other … had not been known to produce flagella — propeller-like structures that enable organisms to swim around. However, …
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal lineages. The … With so many fungal  genomes , the team conducted a large-scale comparison, charting several changes caused by … such as nutrient transporters, were co-opted into symbiotic functions. Recently published in  Nature Communications , …
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Virus Discoveries that Keep Getting Bigger
… single-cell work — have quickly accelerated understanding of giant viruses. The Science In the last thirty years, in … phylum,  Nucleocytoviricota , these giant viruses boast larger genomes than many bacteria. Until recently, … viruses has enabled findings on host range, morphological structures, and infection strategies. More recently, …
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Open Frameworks Training the Next Generation of Scientists
… technologies provide opportunities for students and professors alike The Science In  PLoS Pathogens , a team of … with the JGI and KBase to tap into their existing infrastructures and technologies, enabling these communities to … (Module 1), Experimental Design and Sample Metadata (Module 2), Sample Collection and Processing (Module 3), Data …
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Fishing for Novel Cellulose Degraders
… genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly fishing is a … screen, they can now identify microbes with specific functional characteristics. When they tested the screen … They’ve proposed the name  Candidatus ‘Cellulosimonas argentiregionis’ for this microbe. The work is an example of …
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Mapping Heat Resistance in Yeasts
… A new approach for improving functional annotation in fungal genomes. The Science In a proof-of-concept study, researchers demonstrated that a new … closest relative S. paradoxus at high temperatures (39°C/102°F). The Impact One of the challenges in understanding wild …
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Viruses Reprogram Cells into Different Virocells
… from The Ohio State University and the University of Michigan studying how virus infections cause significant … cells as virocells, a change in name first described in 2011 which reflects the metabolic changes they’ve undergone. … is known about the impacts of these infections on ecosystem functions. As part of efforts to characterize global …
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