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Introducing New Members of the JGI User Executive Committee
… Teresa Pawlowska of Cornell University, and Jana U’Ren (pronounced “you-wren”) of the University of Arizona! They … Pawlowska, who studies fungal-bacterial symbiotic systems, noted that she would like to help advance JGI … factors shaping the assembly of fungal endophytes across land plants and lichens, mentioned her interest in …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… Described in  ISME Communications , a method called Primary Template-Directed Amplification (PTA) yields a much … Science User Facility located at Lawrence Berkeley National Laboratory, is heavily invested in being the bridge to help … much less time than its single-cell counterpart. In this approach, DNA from all the different species is mixed together …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… – and answered – in the study that recently appeared in the Proceedings of the National Academy of Sciences (PNAS). Switchgrass, Panicum virgatum , is a widespread, perennial grass in North America that has been the … team surveying the genomic and phenotypic diversity across the natural range of switchgrass found that polyploidy …
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Matthew Kellom
… and using metagenomics to study these complex natural systems. Microbial communities living in hard-to-reach … interest. Matt also supports various CSP and FICUS user projects for the Metagenome Program. …
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
… in interactions with plants, and as drivers of methane production, nutrient cycling, greenhouse gas emissions, and … director of Berkeley Lab’s Environmental Genomics and Systems Biology Division, and JGI’s deputy for user programs. She also leads the JGI’s Microbial Systems group. …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are … that we use as indices. So it’s really quite a broad ecosystem approach. And that led me to get even more interested … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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How to Target a Microbial Needle within a Community Haystack
… and uncultivated. Developing a more targeted genomic approach would allow researchers to focus on specific microbes … Summary The traditional shotgun metagenomics approach to learning more about environmental samples starts … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab) to develop a process for more …
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10 From JGI on the 2019 Highly Cited Researchers List
… of 21 fields appear on the 2019 list. Congratulations to: Project Manager Kerrie Barry, Cross-Field Category Fungal and Algal Program head Igor … and Molecular Biology & Genetics categories Microbial Systems research group lead and User Programs Deputy …
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Extracting the Secrets of Secondary Metabolites
… CRAGE-CRISPR combo helps further demystify biosynthetic gene … for survival, may now be easier to characterize following a proof-of-concept study in which researchers paired CRISPR … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab) can then employ CRISPR in a …
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A More Intuitive Phytozome Interface
… and has been under active development for over 5 years, provides users with the genome browsers, gene pages, search, … building high performance user interfaces and backend data systems. Trying to maintain v12’s codebase and legacy data … a modern and maintainable version of Phytozome, is not prudent nor possible given the finite staff available to the …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… driving climate change. According to the Environmental Protection Agency , methane gas warms the atmosphere as much … world, encompassing 54 researchers from 14 organizations across nine countries. Learn more about the Hungate1000 work … capable of knocking down human RNA the way that CRISPR-Cas9 systems snip DNA. This could eventually lead to applications …
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Matt Blow
… and User Support Analysis teams. Together, these teams provide analysis support and R&D for production and user science. He received his Ph.D. from the … LBNL, where he worked on computational and experimental approaches to study genome regulation in human and other …
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