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Triggering Morel Fruiting
… contingent fruiting in the wild, this technique provides a highly reproducible system which allows the black morel to … during morel fruiting. The above observation revealed a high capability of morel to mobilize organic carbon from … litter, which could cause forest fires. Compared to the high consumption and acquisition of carbon, nitrogen was not …
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Cultivating Symbiotic Antarctic Microbes
… biosphere), including the global carbon cycle. The JGI is sequencing large numbers of microbes and microbial … by the JGI. Transmission electron microscopy (TEM) provided high resolution images confirming the  Hrr. lacusprofundi  …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… conditions. While scientists around the world were busy sequencing the human genome, an arms race was being waged. … Genome Institute. Hear her memories of what it was like sequencing around the clock and see some of the physical … with the HudsonAlpha Institute for Biotechnology.   Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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Atif Shahab
… development of an integrated platform for tracking JGI's sequencing projects and data warehousing. This platform … tracking, and enables efficient analysis and reporting of sequencing projects and their status. Mr. Shahab has … renowned institutions, developing solutions for large-scale sequencing projects and data analysis pipelines.  …
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Ian Blaby
… PloS one. 15: 11. 2020 Blaby & Cheng, Building a custom high-throughput platform at the Joint Genome Institute for DNA … reveals the impact of hydrogen peroxide on protein stress responses and overlap with other stress transcriptomes. The … Selected Publications …
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Uncovering Novel Genomes from Earth’s Microbiomes
… metabolites for multiple applications. Despite advances in sequencing technologies and computational methods in the … into KBase has immediate value because people can find the high-quality MAGs and use them to inform future analyses,” … and press a button to build a model from our database of mappings between biochemical reactions and annotations. We …
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Streamlining Regulon Identification in Bacteria
… of regulon identification by in vitro transcription-sequencing (RIViT-seq) to facilitate the characterization of … which combines an in vitro transcription assay with RNA sequencing, they were able to identify the target genes of … of gene sets associated with functions like stress responses and cellular differentiation. The tough part is …
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Axel Visel
… Computational Biology , Nucleic Acids Research . Over 80 publications in peer-reviewed journals including Nature, … LA, Rubenstein JL (2013, * corresponding author). A high-resolution enhancer atlas of the developing … Selected Publications …
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Building Wet and Dry Lab Skills
… User Support Analysis team to analyze plant microbiome data via programming languages like Python. The more specific …
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Draft Genome Sequence of the Ectomycorrhizal Ascomycete Sphaerosporella brunnea
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Genome Sequences of Actinobacteria from Extreme Environments in Colombia
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Functionally conserved enhancers with divergent sequences in distant vertebrates
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