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Comparison of short-read and long-read metagenome assemblies in a natural soil community highlights systematic bias in recovery of high-diversity populations
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Amplicon sequencing of ice and water phytoplankton and bacterial communities during an extreme winter in a central Canadian great lake
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A Natural Mechanism Can Turbocharge Viral Evolution
… The first step in the deadly dance between a virus and microbial cell is an embrace. For a virus with a “head-tail” … on its tail fibers to latch onto a specific target on the microbial cell’s membrane. Two decades ago, a team … a fishing line, without harming the rest of the microbial community. The study’s publicly available dataset gives …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… for Texas. Identifying and breeding varieties that have high productivity across a range of environments is becoming … Berkeley National Laboratory (Berkeley Lab), has produced a high-quality reference sequence of the complex switchgrass  … sustainable alternative fuels. Common Gardens Are A Community Effort The common gardens began nearly a decade …
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Frederik Schulz
… cycles. He provides his expertise to the JGI user community and supports various user projects in the Microbial Program. In an LDRD-funded project, Dr. Schulz … Molecular Microbiology, University of Vienna (Austria) PhD Microbial Ecology and Bioinformatics, University of Vienna …
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Silver age of GOLD introduces new features
… repository, making curated microbiome metadata that follows community standards freely available, and enabling … are accessible on JGI data portals including the Integrated Microbial Genomes & Microbiomes (IMG/M) system, enhancing … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked …
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Integrating Experimentation with Data
… and environmental science. They provide the scientific community access to cutting-edge capabilities for … Ferreira , JGI Administrative Support  Heather Roney , PNNL Community Affairs Consultant  …
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In silico analysis of the expression profile of AA9 Lytic Polysaccharide Monooxygenases (LPMOs) and the CDH Cellobiose Dehydrogenase enzyme in wood-degrader Agaricomycetes. The Pleurotus ostreatus case
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… noted study senior author  Tanja Woyke , who heads JGI’s  Microbial Program . The team mined more than 8,500 publicly … from several DOE-mission relevant proposals through JGI’s  Community Science Program . Proposals from researchers at … expanded 10-fold from just 205 genomes, redefining the phylogenetic tree of giant viruses. Metabolic Reprogramming …
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The trajectory of microbial single-cell sequencing
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Microbial Ecology in a Changing Climate
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Microbial adaptability in changing environments
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