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Multilevel analysis between Physcomitrium patens and Mortierellaceae endophytes explores potential long‐standing interaction among land plants and fungi
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Benjamin Cole
Dr. Cole is interested in studying how plants interact with their environment. Prior to joining the … has been on understanding how microbes can colonize plant roots, focusing on genetic components required for effective … of Cell Identity as an R package … Education … Selected Publications … Software …
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Understanding Wildfire Recovery, Starting in Soil
… recovery begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the way for future plants and trees to grow. However, fire changes the microbes … understanding of a recovering soil microbiome provides a window into how to model and track the forest recovery …
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Kjiersten Fagnan
… computing consultant, after completing a petascale postdoctoral fellowship at NERSC and LBNL’s Computational … management. Dr. Fagnan is also a co-PI for the National Microbiome Data Collaborative where she leads infrastructure … … About the JGI Chief Informatics Officer … Selected Publications … Awards and Honors …
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JGI@25: From Life at the Extremes to Editing Genomes
… and environmental challenges. Congratulations to Jennifer Doudna of the University of California (UC), Berkeley and … For the past few years they have partnered with JGI’s Microbiome Data Science group led by Nikos Kyrpides , mining … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Information, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence … together, learned from JGI’s Nikos Kyrpides that his Microbiome Data Science group was also working on RNA virus …
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The ectomycorrhizal fungus Paxillus involutus converts organic matter in plant litter using a trimmed brown‐rot mechanism involving Fenton chemistry
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Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts
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High functional diversity among Nitrospira populations that dominate rotating biological contactor microbial communities in a municipal wastewater treatment plant
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Draft genome sequence of Marinobacterium rhizophilum CL-YJ9T (DSM 18822T), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica
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Refinement of the “Candidatus Accumulibacter” genus based on metagenomic analysis of biological nutrient removal (BNR) pilot-scale plants operated with reduced aeration
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… into sustainable biofuels . For its importance to the DOE mission, switchgrass is among the JGI Flagship Plants . Since 2007, the JGI has been working on identifying … and other traits that make it a viable candidate bioenergy feedstock crop. In 2018, the JGI had sequenced and assembled …
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