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… distribution of these viruses in the various ecosystems, their diversity, their predicted metabolic features … focused on microbial communities from freshwater ecosystems, including, respectively, the northern Lakes of … As a result, the giant virus protein space grew from 123,000 to over 900,000 proteins, and virus diversity in this …

… in studies of complex biological and environmental systems. We optimize our service to the community through …

… is also a faculty scientist in the Environmental Genomics & Systems Biology Division of the Berkeley Lab Biosciences …

… algorithm — a convolutional neural network, called  ResNet 34   — in order to vectorize protein sequences. Sevim is … Genome R&D Group and is one of more than 100 scientists and systems engineers involved in computational work at the JGI. … function (Héctor García Martin of Berkeley Lab’s Biological Systems and Engineering), to assign microbial taxa (Andrew …

… a unique chronic infection cycle. “We’re not sure why we systematically manage to miss them; maybe it’s due to the … By the numbers, the new approach detected inoviruses in 3,609 (6 percent) of the 56,868 microbial genomes and 2,249 … are important from the standpoint of phage-bacterial coevolution and are also useful tools in CRISPR-Cas …

… that we use as indices. So it’s really quite a broad ecosystem approach. And that led me to get even more interested … biomass and then what the consequences are for the ecosystem. ALISON:  So, Ed is trying to understand how the … think like it’s, it’s this unique time where the preceding 300 years, that change was not occurring at that pace, …

Genomes from Single Bacterial Cells bioRxiv , 2024.01. 30.577819 2. Dicenzo et al. 2022. DNA Methylation in  … and during Nitrogen-Fixing Symbiosis with  Medicago spp. Msystems 7 (1), e01092-21 3. Baumgart et al. … board member for Scientific Reports … Education … Selected Publications … Awards and Service …

DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National …

Berkeley National Laboratory (Berkeley Lab), and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the … BGCs in  IMG/ABC (Atlas of Biosynthetic Gene Clusters) by 31%. ( Listen to this JGI Natural Prodcast episode on genome … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …

… pretty important role in the cycling of nutrients in these systems.” -Mike Wilkins, Colorado State University GI users … at: the role viral infection may play in other natural ecosystems. The video complements a recently published paper …

…   On November 3, 2021, the JGI and the Workforce Development & Education … Program Ellen Dow and Elisha Wood-Charlson for the DOE Systems Biology Knowledgebase (KBase) Ian Blaby for the JGI …