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Len Pennacchio
… his Ph.D in 1998 from the Department of Genetics at Stanford University where he uncovered the genetic cause of a rare form of human epilepsy and subsequently generated one of the first mouse models for this common neurological disorder. In 1999, he was named …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
Through the  “Facilities Integrating Collaborations for User Science” (FICUS) call between the JGI and the  … State University, which archives and makes available for research over 100,000 samples and specimens of over 60 … co-hosted by the JGI and EMSL inviting researchers to apply for a FICUS proposal. Additionally, researchers may also …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental Protection … and Liability Act (CERCLA) was enacted by Congress in 1980 for Superfund sites which are hazardous waste areas that … environmental management, contributing to bioremediation efforts for decades. Identifying resident microbes that can …
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Marine Microbe Contains Multitudes
… help regulate the global carbon cycle — fixing, transforming, and respiring carbon. Understanding the metabolisms that SAR324 and other microbes use could inform scientists’ understanding of carbon fluxes in the … Ocean Processes and Ecology and the Daniel K. Inouye Center for Microbial Oceanography: Research and Education. … SAR324 …
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Finding the Fermenters
… the range of bacteria and archaea that rely on this form of metabolism, researchers recently compiled a list of … bioproducts. Summary Researchers at the University of California, Davis and UC Santa Barbara generated a list of … They then used the JGI’s GOLD and IMG data portals to get information about the genomes and genes of the organisms on …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… from the ACTIVE SITES Research Center (ACSI), the Centre for Water and Environmental Research (ZWU) of the University … biology, omics, and big data science, machine learning for experimental science, energy conversion and water … Synchrotron Infrared Structural Biology (BSISB) Program for the characterization of biological processes was of high …
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SPRUCE-ing Up Science
A former JGI intern is now applying his internship lessons on … the trees in his backyard. Originally from northern California and one of the first students to participate in the … their research related to how bacteria that colonize the roots of sphagnum work to transfer their thermotolerance …
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Better Genome Editing for Bioenergy
… tool that can help scientists engineer organisms for bioenergy applications. Cas9 needs guide RNA to lead it … , a team of researchers likewise honed their tool before felling their research problem: at a genetic level, how … Y. lipolytica work? The project was a multi-institutional effort led by then-graduate student Cory Schwartz and his …
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JGI Early Career Researchers Featured in mSystems Special Issue
… sorting (FACS) to sort cells into several small pools before sequencing to recover rare microbes. The technique was … paper, uncovering giant virus sequences in soil for the first time. A second approach known as DNA stable … Eloe-Fadrosh’s Environmental Genomics group, makes a pitch for readers to get involved in the developing field of virus …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
Every year, the JGI sequences around 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to …
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Experimenting with EcoFABs for Student Labs - Jill Bouchard & Ying Wang
To set up flexible, repeatable experiments on plants and microbes, Trent Northen’s group at Berkeley Lab …
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Graduate Students Get Thesis Research Opportunity at the JGI
… to answer our most pressing problems. I’m very much looking forward to working with JGI and LBNL scientists and have … Lab is the home to an exceptional caliber of scientists.” For her project, “Microbial Community Structure and Methane … in wetland carbon cycling and the interactions of plants with their associated microbiomes. Tringe was also …
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