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Standardized naming of microbiome samples in Genomes OnLine Database.
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Viromics approaches for the study of viral diversity and ecology in microbiomes
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Climate-driven succession in marine microbiome biodiversity and biogeochemical function
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… it possible for researchers to get a close look at more ecosystems and organisms than ever before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. Last year, the JGI surpassed three … a DOE Office of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… this past summer. This year’s cohort for the JGI-UC Merced Internship Program was brimming with excitement and determination as they came … & Evolution of Self-Catalytic Introns across Earth’s Microbiomes Sonia Vargas and mentors Tomas Tyml and Frederik …
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FICUS-NERSC/KBASE
… (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( KBase ) integrates systems biology data and … then submits a proposal for consideration in the next review cycle. All proposals undergo technical review by JGI staff as well as staff at the other participating …
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Partners
… as impact multipliers . The JGI has a long-term partnership with the HudsonAlpha Institute for Biotechnology for our … RNA extractions to support plant and other efforts. The JGI works closely with DOE computational facilities (e.g., the National Energy …
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing … consultant, after completing a petascale postdoctoral fellowship at NERSC and LBNL’s Computational Research Division. … Chief Informatics Officer. Click to learn more about how the JGI supports the entire data life cycle through …
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Graduate Students Get Thesis Research Opportunity at the JGI
… Twice a year, the DOE Office of Science Graduate Student … Kaze, part of the 2018 cohort of the JGI-UC Merced Genomics Internship Program. Kaze is part of Mark Sistrom’s lab at … of microbial communities in wetland carbon cycling and the interactions of plants with their associated microbiomes. …
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Maureen Berg
… Maureen is currently developing new high-resolution and high-throughput methods to link … our understanding of the roles that viruses play in their ecosystems, particularly in freshwater ecosystems. …
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Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses
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16S rRNA Gene Amplicon Sequencing Data from Flooded Rice Paddy Mesocosms Treated with Different Silicon-Rich Soil Amendments
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