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An Integrated Dataset to Understand Ecosystem Interaction
… the dynamic relationship between poplar trees and their microbial partners. The Science To help better understand how ecosystems work and how … made available through this multidisciplinary approach allows researchers to conduct a wide variety of analyses that …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… More than 20 UC Merced students have contributed to the research of 13 JGI scientists since the program’s … Ben Cole, a project scientist in Visel’s Genomics of Plant-Microbial Interactions Group who has mentored several of the … where he will be working on the Spruce and Peatland Responses Under Climatic and Environmental Change (SPRUCE) …
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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Kjiersten Fagnan
… computing consultant, after completing a petascale postdoctoral fellowship at NERSC and LBNL’s Computational Research Division. … methods for reacting subsurface flows, and evolved into scalable methods for scientific data analysis. In 2014 … Fagnan is the JGI's Chief Informatics Officer. Click to learn more about how the JGI supports the entire data …
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MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
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Shotgun metagenomic analysis of microbial communities from the Loxahatchee nature preserve in the Florida Everglades
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Metagenomic Profiling Reveals Lignocellulose Degrading System in a Microbial Community Associated with a Wood-Feeding Beetle
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The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions
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Microbial ecology of an Antarctic hypersaline lake: genomic assessment of ecophysiology among dominant haloarchaea
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Impact of library preparation protocols and template quantity on the metagenomic reconstruction of a mock microbial community
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Community proteogenomics reveals the systemic impact of phosphorus availability on microbial functions in tropical soil
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Genomic Encyclopedia of Type Strains, Phase I: The one thousand microbial genomes (KMG-I) project
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