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Virus Discoveries that Keep Getting Bigger
… Nucleocytoviricota , these giant viruses boast larger genomes than many bacteria. Until recently, understanding of … culture-independent approaches to gain insight into the  genomes of giant viruses. In a new review, researchers from … sequence data is read-mapping: using giant virus reference genomes to search for giant viruses in metagenomic reads. …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… and transcriptome analysis of microbial, fungal, and plant research projects.  More recently, these long-reads … weight DNA) is an important factor as well for PacBio metagenomes. Q: How many PacBio metagenomes can I submit?  How … deeply are metagenomes sequenced? A:  For the next call ( CSP New Investigator ), up to 4 long-reads (PacBio) …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… chromosomes of mammals is, for the first time, seen in a plant. The Science Sex in plants can be befuddling. Most species are hermaphrodites, … the U.S. Department of Energy (DOE). (Poplar is a Flagship Plant.) To engineer them, researchers need to select and …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… the bioeconomy. Functional diversity theme. Reading the genomes of individual organisms or environmental DNA, and …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… Todd Anderson currently works to support understanding of plants, microbes and environmental communities that have … of omics analyses for understanding gene expression in plants and the environment, to the JGI’s forging new …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… On February 17, 2021, JGI and the Environmental Molecular Sciences … (FICUS) program. Letters of Intent are due March 17, 2021. Q&A from the Webinar: Q(uestion): Who can apply for …
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Expanding Virophage Diversity
… Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … were found in diverse habitats including the air, plant rhizosphere, wastewater, and even animal and human …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… mosses.  New research identifies sex chromosomes in the plant and illuminates the significant role sex plays in how … which is tough on the type of microbes that break down plant matter. This means plants don’t fully decompose in … HudsonAlpha Institute for Biotechnology sequenced sphagnum  genomes from plants selected by a team from Duke University, …
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Gut Fungi: Unexpected Source of Novel Chemicals
… called natural products . Yet, combing through the genomes of four anaerobic fungal species has revealed, for … compounds may also be involved in how the fungi metabolize plant biomass, which could inform how scientists can more easily convert plants into carbon-neutral biofuels . What’s more, many …
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Matt Blow
… to study genome regulation in human and other vertebrate genomes. When he joined the JGI, he worked as a project … Medicago spp. Msystems 7 (1), e01092-21 3. Baumgart et al. 2021. Persistence and plasticity in bacterial gene … Shulse et al. 2019. Engineered Root Bacteria Release Plant-Available Phosphate from Phytate. Appl Environ …
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Genome expansion by allopolyploidization in the fungal strain Coniochaeta 2T2.1 and its exceptional lignocellulolytic machinery
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Genome sequence of the Trifolium rueppellianum - nodulating Rhizobium leguminosarum bv. trifolii strain WSM2012
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