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Dr. I-Min A. Chen received her Ph.D. in Computer Science. Her … I-MA et al. IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata. Nucleic … Palaniappan K, and Chu K. Maintaining a Microbial Genome & Metagenome Data Analysis System in an Academic Setting, …

In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … seven. Doudna was recognized for her work on CRISPR-Cas9, technology described by the Nobel Foundation as having “a …

… of plant components   The Science There are three main ingredients to tackle when it comes to breaking down a … order to do so is a resource-intensive process. Now, a new study shows how anaerobic fungi — the kind living in the … and alignment to the reference fungal  genome . The study’s pivotal NMR (nuclear magnetic resonance) data, …

Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The … history and perennial lifecycle makes it important to study directly. The large and complex genome of M. sinensis … of California, Berkeley and the HudsonAlpha Center for Biotechnology. Most plants are diploids with two copies of each …

Mini-Metagenomics Approach Helps Identify Novel Archaeal … were then sequenced separately. From these samples, 111 metagenome-assembled genomes (MAGs) were recovered, most of … is typically observed, but to the “TACK” superphylum,” said study first author Bojk Berghuis. “This provided us with …

Kaze, part of the 2018 cohort of the JGI-UC Merced Genomics Internship Program. Kaze is part of Mark Sistrom’s lab at … and metabolism, work on which she will expand with her study of microbes in California’s manmade water transport … lab at the University of Texas-Austin. Rambo will be studying the influence of viruses on carbon cycling in …

Tracking evolution of symbiotic lifestyles across multiple fungal lineages. The Science By comparing 135 fungal sequenced … (Berkeley Lab). All of the fungal genomes used in the study are available on the JGI fungal portal  MycoCosm . The …

The JGI Engagement Webinar held November 5, 2020 (watch the  video below, captions … Q: Can you give us an idea about the scale of an average study? How many samples are typically involved? How long … and data analyses capabilities available on a peer-reviewed competitive basis via its  User Programs . Q:  Are …