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Phylogenomic analysis of 589 metagenome-assembled genomes encompassing all major prokaryotic lineages from the gut of higher termites
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Metabolic Potential for Reductive Acetogenesis and a Novel Energy-Converting [NiFe] Hydrogenase in Bathyarchaeia From Termite Guts – A Genome-Centric Analysis
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Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California
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Lipid analysis of CO2-rich subsurface aquifers suggests an autotrophy-based deep biosphere with lysolipids enriched in CPR bacteria
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Genomic Analysis of Aspergillus Section Terrei Reveals a High Potential in Secondary Metabolite Production and Plant Biomass Degradation
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Systems-wide analysis revealed shared and unique responses to moderate and acute high temperatures in the green alga Chlamydomonas reinhardtii
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Microbial community analysis of three hydrocarbon reservoir cores provides valuable insights for the assessment of reservoir souring potential
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Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding
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Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns
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2022 Progress Report
Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is … the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab … Area are also co-located in the IGB. Vision The vision of the U.S. Department of Energy (DOE) Joint Genome …
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I-Min (Amy) Chen
… data modeling, and biological data management. She was one of the co-authors and key developers of the Object-Protocol … developed at Berkeley Lab. Dr. Chen is currently the Microbiome Computational Resource Lead at the JGI, … P, Ritter SJ, Webb C et al. The IMG/M data management and analysis system v.7.0: content updates and new features. …
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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