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Brachypodium model system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the … Polyploid Genomes in a Pan-genomic Context For the study, partly enabled by the JGI’s  Community Science … offspring of the parents), posing the question if they correspond to the same recurrent speciation outcome or to …

JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of … Lab). And one of the tools that researchers can apply to study the transcription factors that control how genes are … be used by itself, it can also serve as a stepping stone to studying many genomes simultaneously through multiDAP, which …

JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the … of IMG database dedicated to viral genomes assembled from metagenomes. He also demonstrates briefly how to leverage …

In microbial mats, communities of microorganisms live among viruses that infect them. But what trends govern those … and replicating with their host indefinitely. Now, in studying a microbial mat from Cone Pool in Mono County, … on culturing virus and host pairs in the laboratory to study their interactions. This work,  recently published in  …

… of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). They are: Ivan Baxter of the … Center, Sundy Maurice of the University of Oslo, Aaron Robinson of Los Alamos National Laboratory, Rebecca Smith … Along with the existing UEC members, their areas of study span the research interests of the JGI’s user …

The Community Science Program Large Scale Call is focused on genomic science projects that address sustainable biofuel and bioproducts production, leveraging systems-based approaches to unravel functional capabilities of plants, microbes and microbial …

… in 2010. As the Deputy for Science Programs, he focuses on the development and implementation of strategic … Attanasio C, Nord AS, Zhu Y, Blow MJ, Li Z, Liberton DK, Morrison H, Plajzer-Frick I, Holt A, Hosseini R, … EM, Ovcharenko I, Pennacchio LA, Rubenstein JL (2013, * corresponding author). A high-resolution enhancer atlas of …

… biofuels seems fairly simple: place these algae in a container with access to sunlight, water and carbon dioxide so they can grow, and then harvest for use as … Researchers collaborating across multiple institutions have sequenced and analyzed the genome of an alga that …

Monitoring Inter-Organism Interactions Within Ecosystems … the University of Massachusetts Amherst and colleagues are studying how chronic warming is altering how microbes … floor. Alicia Purcell of Northern Arizona University is studying microbial metabolism in the Antarctic Peninsula. …

… programs using mass spectrometry for energy and environmental research, including through the Joint BioEnergy … available to JGI users.  Dr. Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of microbes cycle carbon and …

…   The JGI’s Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, … in defense, nutrient acquisition and communication. Studying how these compounds are biosynthesized and their …

Over 40 percent of the cereal crop’s genes respond to drought stress. The Science Fields of drooping stalks … a limiting factor – before or after flowering. For the study, the team grew two sorghum varieties: one that … relationship between plant roots and arbuscular mycorrhizal fungi (AMF), known to provide plants with nutrients …