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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. … effort. For example, with support from the  Exascale Computing Project , the JGI — along with the National … out as noise using more traditional methods. Thus far 25 terabases of metagenome data have been sequenced and …
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Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms of nutrient cycles and … -Mike Wilkins, Colorado State University GI users and microbiome researchers Mike Wilkins and his graduate student …
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Building Wet and Dry Lab Skills
… Summer 2025 marked the second year of Alabama A&M University students … Brachypodium distachyon plant root exudates on the plant microbiome. This year, however, there was a new aspect to …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… JGI researchers lend expertise to develop tools and data hub for NIH … viruses outnumber the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome … Human Virome Program .  Nikos Kyrpides , head of the JGI’s  Microbiome Data Science , leads one project with JGI …
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How Microbes Can Protect Plants in Drier Straits
… A mini-episode looking at the efforts of Pankaj Trivedi, … approved through the JGI Community Science Program, to use microbiome science to help make plants more resilient to …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… A group led by JGI scientists have made strides in improving … ( CRAGE ). CRAGE enables scientists to insert large pieces of DNA (up to 60 kb) in a single step, directly into the … assess CRAGE’s impact, including how this application could scale,” says Mouncey. The JGI team has already demonstrated …
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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … process called fermentation. To better understand the range of bacteria and archaea that rely on this form of …
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Four Researchers Join JGI User Executive Committee
… Four researchers have been elected to the User Executive Committee of the Joint Genome Institute, a Department of Energy user … The JGI provides advanced genomic capabilities, large-scale AI-ready data and expertise to the global research …
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What Happens To a Rainforest When You Dial Up Drought?
… Rainforests store a big fraction of all the carbon on Earth, and soil microbes play a key role in pulling that carbon out of …
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MGM Workshop at Fisabio Summer School
… June 24-28: Module 2/Microbial Genomics & Metagenomics Workshop The workshop is addressed to students and professionals of biology, biomedical research, the health … research results in genomics, metagenomics and the human microbiome. The workshop will train participants in …
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High-quality draft genome sequence of Gracilimonas tropica CL-CB462T (DSM 19535T), isolated from a Synechococcus culture
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JGI@25: From Life at the Extremes to Editing Genomes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V … On Jennifer Doudna's Nobel Prize … Berkeley Lab coverage …
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