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Metagenomic reconstruction of nitrogen and carbon cycling pathways in forest soil: Influence of different hardwood tree species
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… as well as the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … way, this family is more like including a Swiss Army knife within a toolkit – a tool with some redundancy, that is both … 90 species. They queried the genomes of 15 species from each of six kingdoms: eubacteria, archaea, protist, plant, …
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iPHoP: A Matchmaker for Phages and their Hosts
… viruses with their archaea and bacteria hosts. The Impact Within the domains of archaea and bacteria, millions of  … opens the possibility of using phages to engineer microbial communities. One day, these phages could boost … led by scientists at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at …
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Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts
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JGI Advisory Committees Code of Conduct
… staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National … advisory committee and JLT members’ opinions; Proactively reach out to a member of the JLT when JGI-related issues … Mouncey, JGI Director Massie Ballon, Communications & Outreach Manager Tina Clarke, Human Resources Sr. Business …
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High functional diversity among Nitrospira populations that dominate rotating biological contactor microbial communities in a municipal wastewater treatment plant
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Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses
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Comparative Genomics Using the Integrated Microbial Genomes and Microbiomes (IMG/M) System: A Deinococcus Use Case
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SIPs with Standards
Isotope Probing (SIP) is a powerful technique for studying microbial communities. These experiments can show which microbes are … reusable, and more insightful, for the future of studying microbial communities.   …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
Ben Cole, a project scientist in Visel’s Genomics of Plant-Microbial Interactions Group who has mentored several of the … students including 2018 intern Candace Cole, noted that “each year, they bring an invaluable benefit to our group’s … Jess Jarett, a postdoctoral fellow in Tanja Woyke’s Single Cells Group who mentored 2018 intern Akshay Paropkari, …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… enabled by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … at once — rather than cultivating a single microorganism within a lab setting.  Roland Hatzenpichler is an associate … methane,” Hatzenpicher continued. “These [newly discovered cells] have very simple pathways. There are different ways …
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Community standards and future opportunities for synthetic communities in plant–microbiota research
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