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High functional diversity among Nitrospira populations that dominate rotating biological contactor microbial communities in a municipal wastewater treatment plant
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Draft genome sequence of Marinobacterium rhizophilum CL-YJ9T (DSM 18822T), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica
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Refinement of the “Candidatus Accumulibacter” genus based on metagenomic analysis of biological nutrient removal (BNR) pilot-scale plants operated with reduced aeration
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Rex Malmstrom
… the Microscale Applications group to operate a similar single-cell genomics pipeline that provides JGI users access … stages of the arbuscular mycorrhizal symbiosis. Nature Plants 10, 673–688 Vyshenska et al. 2023. A standardized … dissertation in life sciences 2006 … Education … Selected Publications … Awards and Honors …
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Computationally Classifying Fungal Lifestyles
… nutrients from decaying organic matter (saprobes), and many plant pathogens known to infect most major food crops and feedstocks for biomass and biofuel production. Learning about the … Summary A team led by researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of …
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Expanding Virophage Diversity
… with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages are small viruses … & Microbiomes (IMG/M) data suite—which includes  IMG/VR (for Virus)—for the virophage marker gene MCP, they were able … were found in diverse habitats including the air, plant rhizosphere, wastewater, and even animal and human …
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A Grass Model to Help Improve Giant Miscanthus
The Science A reference genome sequence and genomic toolkit for the perennial grass Miscanthus sinensis has been … (perenniality). The Impact Among the long-term aims for bioenergy feedstock crops are increasing their yields and … miscanthus often appear in discussions of rapidly growing plants whose biomass can be renewably converted into energy …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… also holds a joint appointment with the University of California, Berkeley. Nowadays, Session is an Assistant … organisms may evolve.  Determining the genetic codes of plants is often challenging because in many plants … In “autopolyploids”, genome duplication occurs within a single species. By contrast, “allopolyploids” arise when …
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Metagenomic Analysis of Subtidal Sediments from Polar and Subpolar Coastal Environments Highlights the Relevance of Anaerobic Hydrocarbon Degradation Processes
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Genomes of ubiquitous marine and hypersaline Hydrogenovibrio, Thiomicrorhabdus and Thiomicrospira spp. encode a diversity of mechanisms to sustain chemolithoautotrophy in heterogeneous environments
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Complete Genome Sequence of Anaeromyxobacter sp. Fw109-5, an Anaerobic, Metal-Reducing Bacterium Isolated from a Contaminated Subsurface Environment
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Complete Genome Sequences for the Anaerobic, Extremely Thermophilic Plant Biomass-Degrading Bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and
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