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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. Last year, the JGI surpassed three Petabases of data sequenced — that’s three-quadrillion base pairs of … developers at the JGI and Berkeley Lab were developing specific programs to handle this scale of data. Part 2: …
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Annual Meeting 2027
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Enlarging Windows into Understanding Gene Functions
… in sequences affect traits. In a text file, the rows of letters A, T, C and G appearing over and over in a dizzying array of combinations, are unremarkable, save perhaps for the … absence of all the other letters of the alphabet. Yet the specific sequence of these four letters represents an …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… A new view into a symbiosis could offer benefits to address climate change: pulling atmospheric carbon into soil and boosting biofuel feedstocks with less fertilizer. For millions of … at Lawrence Berkeley National Laboratory (Berkeley Lab). Specific understanding of this symbiosis could offer …
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The Power of One, Amplified
… A preview of how large-scale single cell genomics complements … studies. The Science Researchers demonstrated the value of conducting large-scale single cell genomics by collecting … was similar across sequencing approaches, that species specific sets of single cells harbored mobile genetic …
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An Earth Month Look at Sustainability Efforts at the JGI
… Sustainable Berkeley Lab maintains a  calendar of Earth Month events throughout April. This year, a new … striving for sustainability in lab spaces as well as offices. These efforts dovetail into sustainability … from the disposal end of that lifecycle, there’s a specific push going on at the JGI — the ZERO Waste …
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Nikos Kyrpides
… 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes … Joint Genome Institute, Dr. Kyrpides led the development of the genome analysis and Bioinformatics core at Integrated … his postdoctoral studies with Carl Woese at the University of Illinois at Urbana-Champaign and at Argonne National …
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Building Wet and Dry Lab Skills
… Summer 2025 marked the second year of Alabama A&M University students coming to the DOE Joint … experience funded by a DOE training grant.  Building off the previous year’s project, undergraduate interns … data via programming languages like Python. The more specific goal of the project is to determine how mutations …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… Biotechnology! Loretta Spencer served as a manyterm mayor of Huntsville, Alabama and is known for her contributions to … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 … As well as the seminal Human Genome Project DOE Chromosome publications: The DNA sequence and biology of human …
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JGI Welcomes New UEC Members
… affect users and their access to technical capabilities JGI offers, as well as proposal review procedures and the organization of the JGI Annual Meeting. Any investigator who has been an active user of the JGI at any time in the past two fiscal years is …
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2024 Progress Report
… for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic … A record number of primary users — 2,475 — had active proposals with us, … processed 13,700 metabolomics samples With our users, 247 publications were published   …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… crop and ornamental seeds sold for the upper Midwest are often very different than those bred for Texas. Identifying … varieties that have high productivity across a range of environments is becoming increasingly important for food, … with a strong foundation to improve crop productivity under specific climates. One of many switchgrass collecting trips …
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