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Matt Blow
… Dr. Blow joined the JGI in 2009, and currently heads the Genome Analysis group. In this role he supervises the Genome Assembly, QA/QC, and … BS in Biochemistry and Biological Chemistry, Nottingham University, UK PhD in Genomics, University of … et al. 2024. scMicrobe PTA: Near Complete Genomes from Single Bacterial Cells bioRxiv , 2024.01. 30.577819 2. …
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You Can Move, But You Can’t Hide
… forms of MGEs are viruses and plasmids. They can be found in virtually all of Earth’s ecosystems. A software tool  recently described in  Nature Biotechnology  called geNomad identifies and … Lead Nikos Kyrpides at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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A Complex Confection Decoded: Sugarcane Reference Genome
… genome and now crop researchers can work toward advancing sugarcane biotechnology. The Science Considered the … genome for the sugarcane cultivar R570 has been  published in  Nature by an international consortium. With the genetic code of … conducted by the USA Department of Energy (DOE) Joint Genome Institute (https://ror.org/04xm1d337), a DOE …
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Tanja Woyke Elected to American Academy of Microbiology
… of Microbiology (AAM) ! She is among the 68 new Fellows in the Class of 2020, selected from 118 nominees. The selection process for AAM Fellows is based on their records of scientific achievement and original contributions that have advanced microbiology. Academy …
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Streamlining Regulon Identification in Bacteria
… RIViT-seq technology could speed up associating transcription factors with their target genes. The … that can be turned on or off by the same regulatory protein. Researchers demonstrated the efficacy and potential of regulon identification by in vitro transcription-sequencing (RIViT-seq) to facilitate …
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First Monoploid Reference Sequence of Sugarcane
… and have two sets of chromosomes, one from each parent. In contrast, many crops have multiple sets of chromosomes … genomes are more difficult to sequence and assemble, in turn limiting the use of modern, genomic breeding in these crops. For … This work was supported by the International Consortium for Sugarcane Biotechnology, as …
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Crysten Blaby-Haas
… Dr. Blaby-Haas joined the JGI in 2022 as lead of the Biomolecular Materials Initiative, a partnership between JGI and the Molecular … Handling Editor, Journal Experimental Botany, 2022 – present … Scholarship, 2002 & 2004 Graduate Student Award, 59th Lindau Meeting of Nobel Laureates and Students in Lindau, …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Science Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, 24 … accepted from 70 full submissions based on 92 letters of intent. Additionally, 40 percent of the proposals were … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Taking Stock of the Known and Unknown Microbial Space
… diversity hotspots Over the past few decades, advancements in sequencing technologies have led to an abundance of microbial … from understanding the interactions between microbes, hosts, and their environments could be applied to multiple … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User …
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A … and genomic toolkit for the perennial grass Miscanthus sinensis has been published. Analysis of the genome sequence … This work was supported by the Energy Biosciences Institute and the DOE Center for Advanced Bioenergy and …
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in cell-free environments? (Spoiler: Yes.) Think of cells as tiny factories: within their walls they have … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… In this short video, UC Merced undergraduate and graduate students share how their summer internship experiences have influenced their careers in science. Hear more about what …
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