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Dan Rokhsar
… directed towards the sequencing, annotation, and analysis of three human chromosomes. After successful completion of … IBM Watson Research Center, Yorktown Heights, NY … Publications … 2018 Marthella Foskett Brown Chair, … Genomics and Computational Biology … Education … Selected Publications … Awards and Honors …
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Tracking the Origins of Methane-Producing Microbes
… archaea are estimated to produce 500 million tons of methane a year, which is over half the total global … recent studies now suggest the gene cluster predates this microbial group. Recently published in the Proceedings of … Following that work, they partnered once more with JGI Microbial Program head Tanja Woyke and her Single Cells team …
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JGI Earth Month: Wetlands Work in #TenHundredWords
April marks both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … Tringe , JGI’s User Programs deputy and head of the Microbial Systems group through the  DOE Office of Science … Student Research (SCGSR) program . Her research project, “Microbial Community Structure and Methane Production in …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… for the triennium 2017-2020! Established by the University of Queensland in 1986, the van Niel Prize recognizes … Woyke as a pioneer in uncovering the hidden diversity of “microbial dark matter”–that uncultured and unknown majority … American Academy of Microbiology (AAM). She has led JGI’s Microbial Genomics Program since 2009 and heads the Single …
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Katherine Louie
… efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass … Rocha UN, Shi S, et al. Dynamic root exudate chemistry and microbial substrate preferences drive patterns in … Sci Rep. 2013;3: 1656. … Education … Selected Publications …
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The Soil Blooms Green
Every fall, a mysterious green growth appears on top of farmers’ fields: a microbial community that might be quietly improving the …
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Fishing for Novel Cellulose Degraders
… genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly fishing is a … characteristics. When they tested the screen method on a microbial community from geothermal hot springs, they … microbes. The new technique is another tool for microbial ecologists to learn more about the diversity of …
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MGM Workshop at Fisabio Summer School 2025
Register here The workshop is addressed to students and professionals of biology, biomedical research, the health sciences and … will be devoted to training in the use of the Integrated Microbial Genomes & Microbiomes (IMG/M) system, presented by …
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Uncovering Novel Genomes from Earth’s Microbiomes
Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … have uncovered genomes for just a small fraction of Earth’s microbial diversity. Because most microbes cannot be … approaches. Identifying and characterizing the planet’s microbial diversity is key to understanding the roles of …
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Methane Makers in Yosemite’s Lakes
… and met local wildlife (a marmot!) as they’ve sampled the microbial communities living in the mountaintop lakes of the Sierra Nevada mountains. These lakes are isolated, …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… registers the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species decompose debris, mobilize nutrients from that … to tree roots and soil. These fungi help shape a forest’s ecology. They store carbon and cycle key nutrients like …
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Rex Malmstrom
Dr. Malmstrom is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI … that reveals in situ functional activities of specific microbial groups within complex communities.  The Microscale … dissertation in life sciences 2006 … Education … Selected Publications … Awards and Honors …
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