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Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber
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A plant host, Nicotiana benthamiana, enables the production and study of fungal lignin-degrading enzymes
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New Insights Into the Influence of Plant and Microbial Diversity on Denitrification Rates in a Salt Marsh
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The core metabolome and root exudation dynamics of three phylogenetically distinct plant species
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Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants
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Scaling Up Existing Skill Sets
Over the course of the summer, the JGI-UC Merced Genomics Internship … internship opportunities in fields ranging from plant-microbe interactions to functional genomics. Hear from … researchers and help expand or develop more internship programs like the JGI Internship Program during my STEM …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the fungus Olpidium is a … genetic material with various origins, ranging from fungi, plants to bacteria. Back in 2011 when these genome and … the much more extensive taxonomic and genetic sampling, our study confirmed the affinity between Olpidium and the …
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JGI at the AGU Fall Meeting
This year the AGU Fall Meeting, with the theme “Science is Society,” hosts sessions in New Orleans and … DOE User Facility: Learn About Available Expertise and Resources, Open-Call Opportunities, and Important Tips for … of Arizona: “Spatial metabolic profiling in roots reveals plant specific responses to drought at the Biosphere 2 …
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Green Algae Reveal One mRNA Encodes Many Proteins
… reported in the Proceedings of the National Academy of Sciences , a team of researchers has found numerous examples … zofingiensis . “I was scrutinizing the genes of one of our species of algae and kept seeing what looked like … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in … biological and environmental samples in support of user science.  Capabilities offered by the platform are a result … Transitions in the Green Alga Chromochloris zofingiensis. Plant Cell. 2019;31: 579–601. 5. Erbilgin O, Rübel O, Louie …
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Draft genome sequence of Marinobacterium rhizophilum CL-YJ9T (DSM 18822T), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica
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Simon Roux
Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His … Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université Blaise Pascal, France Ph.D. in … with long standing virus-host interactions. The ISME Journal 15, 1569–1584. Nayfach et al., 2020. CheckV assesses …
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