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JGI announces 2024 Functional Genomics awardees
… bioeconomy.  This year’s project goals range from improving crop productivity for bioenergy through enhanced red-light …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great … green sharpshooter. In 2012, single cells isolated from the microbes found in the oil plume from Deepwater Horizon oil … nitrogen loss in these waters. The top image on the left shows how, from a single bacterial cell (seen here in a glass …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… long-term open access ecological data to better understand how U.S. ecosystems are changing.  Through the  “Facilities … the FICUS program at:  jgi.doe.gov/user-programs . Q:  How can I get that NEON Biorepository Letter of Support … Q:  Does NEON have or plan on collecting RNA samples from soil or surfaces for microbe-focused collections? A: Not at …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… DNA outside a cell is key to interrogating what genes do, how they work, and applying them to environmental and energy … analysis of specialized metabolism in bioenergy crops: current progress and challenges , details how an … on thiolases, a superfamily of enzymes found only in microbes, which make carbon-carbon bonds. This ability is …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… As warm-adapted microbes edge polewards, they’d oust resident tiny algae. … without a defined nucleus). Colder waters nearer the poles, however, tend to favor eukaryotes ( microorganisms with a … because we now have a new angle on how warming is impacting these marine communities,” said Mock. The …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… technology with JGI users will enable us to assess CRAGE’s impact, including how this application could scale,” says Mouncey. The JGI … advantage of their joint metabolisms. Because, together, microbes can be used to create compounds more efficiently …
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Ian Blaby
… analysis on Chlamydomonas reinhardtii reveals the impact of hydrogen peroxide on protein stress responses and …
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JGI@25: Roots of a Mutualist Relationship
… we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great … Fungal Genomes Project.       Francis Martin on the main impact of ectomycorrhizal fungi, excerpted from his talk at the 2015 JGI Annual Meeting:   Francis Martin on how JGI has changed mycology, excerpted from his talk at the …
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Honey Bee Gut Microbiota Divvy Up Dinner
… Scientists find bee gut microbes have a division of labor when it comes to … down polysaccharides. But scientists have wondered exactly how the microbial community carries out its helpful … bacterial clades can metabolize hemicellulose and pectin. However, the two specialize to an extent.  Gilliamella  …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text … can apply to study the transcription factors that control how genes are turned on is known as DNA affinity … world at this scale.” A bottleneck in the DAP-seq protocol, however, is the need to purify each transcription factor of …
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Webinar: PhycoCosm Tutorial
… it is based on 3.  Q(uestion): Can you please explain again how did you pick genomes to be on the genomes portal? For … a model that is not based on a genome model with PhycoCosm, how do we go about getting it in your system? A: I think the …
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