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Honey Bee Gut Microbiota Divvy Up Dinner
… of the National Academy of Sciences . The team focused on the dominant bacterial clades shared between honey … pollen’s pectin and hemicellulose are degraded mainly by just two clades:  Gilliamella,  which mostly resides in the bee’s ileum, a structure analogous to the human small intestine; and  Bifidobacterium,  …
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Accelerating Metagenomics Discoveries with Deep Learning
… (Berkeley Lab) and other institutions shared their works-in-progress with 86 participants in an online workshop to … workshop, Volkan Sevim, a computational biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), … that low sequence identity may belie. The technology he’s using is magical; transform any length of amino acid …
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Graduate Students Get Thesis Research Opportunity at the JGI
… at one of the DOE national laboratories or national user facilities. As a result of the latest call , a total of … UC Merced School of Natural Sciences. “I’m deeply concerned about climate change and this is a remarkable opportunity to … how engineered environments contribute to greenhouse gases,” Kaze said. “It’s an exciting time in the field …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… boggy wetlands produces an estimated 5% of annual greenhouse gas emissions. Understanding how sphagnum, a primary … their role as carbon sources. Summary Sphagnum, a genus of just under 400 mosses that can carry up to 25 times their dry … no. 10.46936/10.25585/60001030) (A.J.S.) conducted by the US Department of Energy (DOE) Joint Genome Institute ( …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… the genetic codes of plants is often challenging because in many plants chromosomes are present in more than two … his words, the history of the strawberry is complicated because, “when you have comparisons to other closely related … an early algorithm and developing it in order to talk about the subgenome identity.”  These days, Session is …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… This single environmental trigger highlights efficiency for users requiring multiple omics methods to examine microbial … chemical production. The Science Soil bacteria in the genus Streptomyces are nature's chemical factories. They hold … gene activity and chemical output over time, the team mapped how the bacterium redirects its energy, building …
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The JGI Data Portal: Improving User Experience
… between the JGI and the information technology company Truss has resulted in the JGI Data Portal , a pilot download … processes from the other JGI Portals, as well. “For thousands of scientists around the world, the JGI Genome Portal … , and PhycoCosm , serve researchers with unique areas of focus and data and computational needs. Over its 23-year …
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Green Algae Reveal One mRNA Encodes Many Proteins
… messenger RNA, which encodes a single protein. Recently reported in the Proceedings of the National Academy of Sciences , a team of researchers has found numerous examples of polycistronic expression – in which two or … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Berkeley Lab and the Environmental …
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Better Genome Editing for Bioenergy
… of the genes in a lipid-prolific yeast. The Impact The team used this set of guide RNAs on  Yarrowia lipolytica to … furthers the U.S. Department of Energy’s goal of producing sustainable fuels from alternative sources. Moreover, the team says the approach they used to validate their set of guide RNAs could be applied to …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… lineages. The Science From the distinct smell of eucalyptus to the flavor of wine, terpenes are ubiquitous. A diverse … plants. The locations of TPS genes and gene clusters were mapped against those of E. grandis to find differences in … genome organization between the two species. The work was reported in the journal Heredity . In order to understand …
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An Addiction Crucial to a Fungus’ Reproduction
… A fungus relies on bacteria to regulate key components of its … and a part of the oil-producing Mucoromycotina group, about which little is known. The Cornell team cultivated and … ATCC 52813) as part of the 1000 Fungal Genomes project. As reported in the November 29, 2017 issue of Nature …
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Defining a Pan-Genome for Antarctic Archaea
… sequences from six hypersaline lakes, researchers focused on understanding the genomic variation in haloarchaea … and possibly cold-temperature enzymes for biotechnological use. Summary Conditions such as extreme cold, high levels of … the DOE Joint Genome Institute, a DOE Office of Science User Facility, microbial ecologist Rick Cavicchioli and his …
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