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JGI@25: The Little Alga That Could
… impact. Her lab has sequenced four additional green algal genomes using Chlamy as a reference for functional …
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A Complex Confection Decoded: Sugarcane Reference Genome
Phytozome .   … The work (proposal: https://doi.org/10.46936/10.25585/60001084 and https://doi.org/10.46936/10.25585/60001194) conducted by the USA Department of …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… developed a method to correctly identify polyploid subgenomes without needing to know the genomes of their ancestors. The method was tested on a number of plants, including  genomes of cotton lineages and the  oilseed crop false flax …
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Annual Genomics of Energy & Environment Meeting
Thank you for joining us at the 2024 DOE Joint Genome Institute (JGI) Annual Genomics of Energy …
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
… was recognized for “advances in sequence-based studies of microbial assemblies, revealing the roles of microbial communities in carbon cycling, in interactions … JGI’s deputy for user programs. She also leads the JGI’s Microbial Systems group. The award ceremony was held January …
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Supercharging SIP in the Fungal Hyphosphere
… automated aspects of a commonly-used process for studying microbial communities, with results published in the  … things like biomass and  biofuels . However, AMF and the microbial communities they inhabit are notoriously difficult … the auspices of the U.S. DOE under Contract DE-AC52-07NA27344. The work conducted by the U.S. Department of Energy …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… that allows researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  … Mouncey. Using CRAGE, JGI has established a portfolio of microbial hosts that users can select to be engineered. … aim to inform the engineering of stable, synthetic microbial communities to take advantage of their joint …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… metatranscriptome datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then looked into …
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JGI Accepts 17 Proposals for Community Science Program
… (Berkeley Lab). They were selected through peer review from 41 full proposals out of 50 letters of intent submitted. … State University and colleagues are interested in the microbial communities that live on Alaska’s glacially … public agricultural research corporation, is focused on microbial interactions on the Amazon forest floor. Alicia …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… and management best practices that have advanced the microbial sciences. The Prize also recognizes innovative and … has changed our understanding of the microbiome and the microbial sciences field. Roux will be recognized at the … His project, “Characterizing Virus-Driven Alterations of Microbial Metabolism in Model Soil Ecosystems,” uses a …
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PhycoCosm Tutorial
… the largest interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… in Complex Systems (LRC) in Menlo Park, Calif. In the June 24, 2022, issue of the journal Science, Volland and … in coastal sediments,” said Woyke, who also heads the JGI’s Microbial Program and is one of the article’s senior … level. They amplified, sequenced and assembled the genomes. In parallel, Gros’ lab also used a labeling …
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