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… for the highly complex sugarcane genome . The Science Most species are diploids and have two sets of chromosomes, one … and their complex genomes are more difficult to sequence and assemble, in turn limiting the use of modern, … sets of chromosomes to produce a monoploid reference sequence. For the highly polyploid sugarcane, an …

… Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass … M. sinensis and a tetraploid M. sacchariflorus , another species of Miscanthus that was sequenced. Understanding the …

… in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Joint Genome … builds upon thousands of microbial genomes that have been sequenced by the JGI though not formally analyzed or … necessary to extract meaningful biological insights from sequence data, employing IMG data and tools for comparative …

… The deliverables can range from raw sequence data to well-annotated assembled genomes to … listing of approved proposals can be found here. All sequence data will be accessible on the JGI Data Portal. … How much will it cost me to sequence or synthesize my target or obtain metabolomics data? …

… updateable transcriptome resource spanning diverse plant species. It was developed to improve plant genome … descriptions. This resource also helps in performing cross-species comparative transcriptomics. *The HudsonAlpha Genome … Schmutz is the Plant Program Lead at the JGI. Sarah:  Why is a resource like this important to the field of plant …

… al. (2017) Protein structure determination using metagenome sequence data. Science   355(6322):294-298 Paez-Espino D. et … Commun. 7:10476 Varghese NJ,  et al. (2015) Microbial species delineation using whole genome sequences. Nucleic Acids Res. 43(14):6761-71 Kyrpides NC et …

… computational analyses of BGC size and complexity, BGC sequence composition, metabolic similarity & compatibility, … The SMC provides complete sequence and annotation data for secondary metabolite … and the public, and provide programmatic access to all sequence and annotation data and their comments. …

… A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct groups with … of SAR324 cells and their gene expression, the team then sequenced community genomes and expressed gene transcripts … ecotypes because, historically, they have used the sequence of a “marker gene,” namely the 16S ribosomal RNA …

… JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative … ) on PhycoCosm tree with several sequenced genomes. 2.  Q: How exactly EcoGroups are built? … together similar genes in different strains or related species. 21.  Q: How can we select & change for other …

… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work may … to defend against RNA,” Roux noted, “although it’s unclear why this is so rarely detected.” Developing Approaches for …