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Metagenome Program
… approaches to assess microbial activity across ecosystems.  By studying microbial communities and their interactions, … environmental sustainability, and many other applications. By understanding how microbes contribute to ecosystem … comprising the largest public collection of plasmid sequences identified from genomes, SAGs, MAGs, metagenomes …
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Plant Program
… the natural world’s potential to address global challenges by exploring plants’ role in capturing carbon, detoxifying … Genomics portal. Families of related genes representing the modern descendants of ancestral genes are constructed at key … manipulation in the laboratory. Both germplasm (sequenced mutants and natural accessions) and protocols …
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Genome resources for three modern cotton lines guide future breeding efforts
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Partnerships: Adopt-A-Genome
… in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Department of Energy Joint Genome Institute, builds upon thousands of microbial genomes that have been sequenced by the JGI though not formally analyzed or …
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Phosphate Availability Modulates Root Exudate Composition and Rhizosphere Microbial Community in a Teosinte and a Modern Maize Cultivar
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Fungal & Algal Program
… bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the genomes of these organisms, … The  1000 Fungal Genomes Project is a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of … of fungi. Mycocosm enables users to navigate across sequenced fungal genomes, and to conduct comparative and …
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Natural Prodcast Episode 14: Nigel Mouncey
… with my boss, JGI Director Nigel Mouncey. DAN: I’ll start by saying this is the first in-person recording that I’ve … that for about six years. During that time, we got acquired by DSM. And a little after that acquisition, I moved to … to some people more about down the road. Email Nigel! He’ll sequence whatever you want!  [LAUGHTER]  NIGEL MOUNCEY: We …
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Ancient Algae Reveal Secrets of Plant Evolution
Berkeley National Laboratory (Berkeley Lab), scientists sequenced the genomes of four  Zygnematophyceae algae, which were isolated from diverse freshwater environments. Arising in tandem from the same … with stress responses and compared them with those found in modern plants. They discovered that ancient algae already …
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass  … into how the multiple chromosomes of  Miscanthus arose by ancient hybridization (polyploidy) and insights into the …
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass … into how the multiple chromosomes of Miscanthus arose by ancient hybridization (polyploidy) and insights into the …
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Secondary Metabolites Program
… underexplored reservoir of secondary metabolites produced by bacteria, fungi, algae and plants. These compounds are … computational analyses of BGC size and complexity, BGC sequence composition, metabolic similarity & compatibility, … of horizontal gene transfer. … The SMC provides complete sequence and annotation data for secondary metabolite …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … Published online September 28, 2022, in Cell , a team led by researchers at Tel Aviv University in Israel, the … to defend against RNA,” Roux noted, “although it’s unclear why this is so rarely detected.” Developing Approaches for …
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