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Partnerships Development Team
… feedstock into valuable bioproducts, but many  Clostridium strains are difficult to engineer. Yasuo Yoshikuni and his … be working with LanzaTech to rapidly engineer a Clostridium strain for the production of biofuels and bioproducts from …
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Partnerships: Adopt-A-Genome
… in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Department of … builds upon thousands of microbial genomes that have been sequenced by the JGI though not formally analyzed or … sequence to biological inference. … Genome sequences of key bacterial symbionts of entomopathogenic nematodes: …
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Complete genome sequence of the marine methyl-halide oxidizing Leisingera methylohalidivorans type strain (DSM 14336T), a representative of the Roseobacter clade
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Genome sequence of the pink–pigmented marine bacterium Loktanella hongkongensis type strain (UST950701–009PT), a representative of the Roseobacter group
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Genome sequence of the Leisingera aquimarina type strain (DSM 24565T), a member of the marine Roseobacter clade rich in extrachromosomal elements
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… were lost in other forms of  Chloroflexota that adapted to marine environments hundreds of millions of years ago.  The … Terrestrial  Chloroflexota have certain traits that most marine  Chloroflexota lost when they returned to an ocean … those traits vanished in bacteria that evolved to inhabit marine environments, while echoes of others remain.  Until …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple … of bacteria with diverse metabolic activities. Found in marine and terrestrial environments, actinobacteria play … Group. Many of these bacterial and archaeal genome sequences have been generated using techniques that the JGI …
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Single Cell Research Group
… is also reflected in the strongly biased representation of sequenced genomes in the public domain, the bulk of which … T ., Klenk H. P., Kyrpides N. C. 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work may … to defend against RNA,” Roux noted, “although it’s unclear why this is so rarely detected.” Developing Approaches for …
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Genome sequence of Phaeobacter inhibens type strain (T5T), a secondary metabolite producing representative of the marine Roseobacter clade, and emendation of the species description of Phaeobacter inhibens
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Genome sequence of Shimia str. SK013, a representative of the Roseobacter group isolated from marine sediment
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JGI Portals
… of microbial communities based on their metagenome sequence, in the context of reference isolate genomes … of fungi. Mycocosm enables users to navigate across sequenced fungal genomes, and to conduct comparative and … annotation data for secondary metabolite biosynthetic gene clusters (BGCs) across all kingdoms of life. Tools are …
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