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Natural Prodcast Episode 19: Bill Fenical
… … DAN UDWARY: Hey, everyone. I’ve got a great episode for you here today. We got the opportunity to talk to one of … world. We used ships. We used land-based marine labs. We wrote cooperative grants with people in other countries. And … time, we found another molecule. This time it was from a fungal strain collected from sediments in the ocean. No, …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished … with some of the latest developments in microbial genomics, metagenomics, and computational biology, and to … of submitting, getting feedback , and all the rules and protocols that go along with submitting a paper. That was …
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Natural Prodcast Episode 3: The Primer, Part 3
… it’s a little hard to find in print, but we live in the information age and the ebook version is available at most … DNA sequence – sequences for the genes that code for the proteins that produce secondary metabolites. Do you recognize … of biology. You know, I’ve personally been able to work in genomics, in protein structure, in synthetic biology, …
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Tracking of enzymatic biomass deconstruction by fungal secretomes highlights markers of lignocellulose recalcitrance
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A telomere-to-telomere genome assembly resource of Bipolaris sorokiniana, the fungal pathogen causing spot blotch and common root rot diseases in barley and wheat
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User Advisory Committees
All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley … to establish with our stakeholders. The guiding principles for participating on JGI Advisory Committees are outlined in … operations and scientific relevance and quality. … The Fungal & Algal Advisory Committee is chartered to offer …
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Evolution of a Fungal Gene Expression Regulator
A, C, T or G in a genome sequence can lead to changes in protein structures and functions, but the DNA bases … on the largest analysis of 5mC distribution across the fungal tree of life to date, involving more than 500 species … technologies for producing both reference genomes and epigenomics, researchers are unwrapping complex mechanisms of …
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Community Science Program
… community at large with access to high-throughput sequencing, synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  … PIs who have never led a JGI project, and the Functional Genomics call is for projects that translate genomic …
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Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our … submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for User … soil carbon storage during simulated range shifts of plant-fungal symbionts … Elucidation of the gene regulatory …
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Supercharging SIP in the Fungal Hyphosphere
High-throughput stable isotope probing helps ID novel interactions between bacteria and fungi … successfully automated aspects of a commonly-used process for studying microbial communities, with results published … into how plant materials can be broken down for things like biomass and  biofuels . However, AMF and the microbial …
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Institutional User Agreements
Every approved proposal starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for …
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