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Who We Are
… of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence Berkeley National … Systems Biology Knowledgebase and the National Microbiome Data Collective.    … (JGI) is a high-throughput AI-centric genomic science user facility located at Lawrence Berkeley National …
Learn more
Natural Prodcast Episode 9: Roger Linington
… there are lots of tricks we can do to try and backfill the legacy data. Some of that’s quite difficult because styles … of Energy Joint Genome Institute, a DOE Office of Science User Facility located at Lawrence Berkeley National Lab. You … let us know! Find out more at  jgi.doe.gov/user-programs . Thanks, and see you next time!  …
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Natural Prodcast Episode 6: Marc Chevrette
… for a company. Personally, that was my first taste of big data if you want, maybe it’s medium data now. But at the … of Energy Joint Genome Institute, a DOE Office of Science User Facility located at Lawrence Berkeley National Lab. You … collaborate, let us know! Find out more at jgi.doe.gov/user-programs . Thanks, and see you next time!  …
Learn more
Mining New Frontiers: The Critical Minerals and Materials Joint Call
… to request the capabilities and expertise of both national user facilities in one research proposal.  Submit research … use of JGI capabilities is free. The JGI supports remote users. Users conduct experiments in their own labs or … users with various outputs free of charge, including data such as fully annotated genome assemblies or …
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How To Use Our Systems
… One of the JGI’s key assets is our user community, comprising a broad range of researchers and … have yielded numerous, high-quality outputs, such as data, publications and software. The JGI supports the entire … data ecosystem. Our community of data-downloading users spans tens of thousands of researchers. The JGI is …
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New Lineages of Life Group
… eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, … to extract insights from large-scale biological datasets: Our group develops and applies artificial … learning approaches to analyze large-scale biological datasets. This work helps uncover patterns and relationships …
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The JGI Data Portal: Improving User Experience
… technology company Truss has resulted in the JGI Data Portal , a pilot download experience accessible from … data, the team noticed that a large percentage of Phytozome users who were seeking to download all the data associated … this task. Improving the download process for this group of users offered the promise of an immediate benefit. The Data …
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Statement on the Use of Genomics Data
… of genomics through open access to resources and promoting data sharing to accelerate discovery and maximize the … the community to inform necessary changes to JGI data policies. Since completion of the HGP, the JGI has sustained … to uploading sequence data generated on behalf of its user community to NCBI as well as to the  data portals that …
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Three Join the JGI User Executive Committee
… The JGI User Executive Committee (UEC) recently welcomed three new … laboratory researchers. This will help the JGI shape its programs, capabilities, and resources to best meet the broad … and new users, advise on data release and sharing policies, and help develop programs to increase …
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Natural Prodcast Episode 15: Katherine Duncan
… on a few metabolites and doing a kind of comprehensive overview of that has been quite interesting. Dan Udwary: … years to improve gender equality of people entering science programs. So actually, the number of women entering science … of Energy Joint Genome Institute, a DOE Office of Science user facility located at Lawrence Berkeley National Lab. You …
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CSP Large Scale Call
… for scientific merit, DOE mission relevance, proposed data usage by the applicant/community, and track record of … of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. … for scientific merit, DOE mission relevance , proposed data usage by the applicant/community, and track record of …
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JGI User Executive Committee Expands
… Six new members have been elected to the User Executive Committee (UEC) of the U.S. Department of … to represent the user community by providing input on JGI policies and capabilities that affect users. Robinson is a … Area. He has partnered with the JGI through several user programs. He’s also bringing his fungal genetics expertise …
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