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Soil virus offers insight into maintaining microorganisms
… Using the IMG/M data portal, researchers have identified a virus … impact on the microbial communities within soil. Using metagenomics, scientists can shed light on hidden components, … domains of life.  Using the IMG suite, JGI retrieved 142 of the GH75 AMGs, which encode enzymes that break down …
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Natural Prodcast Episode 2: The Primer, Part 2
… to the second episode of the Natural Prodcast. This is part 2 of our “primer” episode, so if you ended up here somehow … maybe obvious or notable. We are still in – not an early stage. I think we can identify most secondary metabolism … yeah. I mean, you might be producing things at different stages of growth or different signals from the environment …
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Neha Varghese
… to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides … and implementation of microservices in conjunction with the IMG platform. …
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Annual Meeting 2027
…   Save the Date: March 16–18, 2027 The next JGI Annual Meeting will be held in March 2027 at the Oakland Convention Center. Check this page as further details become available. Sign up for our …
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Natural Prodcast Episode 3: The Primer, Part 3
… and listen to the first two parts ( part 1 is here and part 2 is here ) so you understand what’s happened so far in the … me to check her stat and she was absolutely correct. Since 2010 there have been eight new antibiotics added to the … from your cultures, but then you’re going to find another 20 or 30 secondary metabolism pathways that you didn’t even …
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JGI Advisory Committees Code of Conduct
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IMG/VR
… JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the latest release … of IMG database dedicated to viral genomes assembled from metagenomes. He also demonstrates briefly how to leverage … of IMG/VR to browse and search through the more than 2 million viral sequences available in IMG/VR v3. …
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Nikos Kyrpides
… Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development … comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and … Unraveling the functional dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. …
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Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain TA1
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Plant Microbial Interactions Group
… 10.1038/s41579-020-0381-4 10.1038/s41396-020-0637-z 10.1038/s41477-024-01666-3 10.1016/j.celrep.2023.112676 10.1016/j.devcel.2022.01.008 …
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JGI Launches Latest Strategic Plan
… For the Joint Genome Institute, the end of 2018 was marked by a celebration of contributing over one … Biosciences Associate Laboratory Director, of the 100-page document with over 200 actionable milestones. JGI … leadership role in a Microbiome Data Science effort (pages 37-39) and the launching of a Secondary Metabolites …
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JGI Welcomes New UEC Members
… a breadth of institutions, research topics and career stages. The election period concluded on October 21. The results are in and JGI extends a warm welcome to the … To view the full roster of members visit the UEC page . …
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