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Natural Prodcast Episode 10: A Primer on Genome Mining
… about natural products and the science and scientists of secondary metabolism. Welcome back for our second season of … would have really done a somewhat exhaustive chemical analysis of a bacterium that they’re interested in, usually … peptides, remember, are big, complicated enzyme systems that really just exist to pull an amino acid out of …
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SECONDARY WALL ASSOCIATED MYB1 is a positive regulator of secondary cell wall thickening in Brachypodium distachyon and is not found in the Brassicaceae
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Mechanically induced localisation of SECONDARY WALL INTERACTING bZIP is associated with thigmomorphogenic and secondary cell wall gene expression
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Natural Prodcast Episode 23: Aaron Puri
… the genes for and explore the chemistry of quorum sensing systems, specifically the acyl homoserine lactones.  If you … predict or just understand better the language of microbial cell-cell communication. And he told us about his work in … of these organisms? What’s its name? And what kind of secondary metabolism has it got? AARON PURI: Yeah. OK. So I …
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New Lineages of Life Group
… use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to … of metagenomic assembly and binning of a giant virus. mSystems. 5 (3) Schulz et al. (2018) Hidden diversity of soil … Schulz and Horn (2015) Intranuclear bacteria: inside the cellular control center of eukaryotes. Trends in cell …
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Frequently Asked Questions: Project Management
… sample and project metadata, and to access JGI tools and systems. … Go to the “ edit contacts ” page in your account. … metadata about the samples, and the sample QC results. … Analysis and annotation of publicly available projects can … ) Metagenomes and Single Cells: IMG/M   (citation: …
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Natural Prodcast Episode 17: Cassandra Quave
… able to not only purchase their own HPLC to enable faster analysis of their plant extracts, but also establish their … I think one thing we do see is that generally, the major secondary metabolites are there, they just are going to be … identifying their roles within these complex communication systems across kingdoms of life. ALISON TAKEMURA: OK. This …
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User Support
Investigator Providing a general orientation to JGI systems to Investigators Preparation of formal Statement of … has completed, your Project Manager will initiate analysis with the appropriate JGI analysis team. During this time, your Project Manager will: …
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Community Science Program
… accepted proposals, sequencing, synthesis, metabolomics and analysis will be performed by the JGI at no cost to the … large. In most cases where the JGI provides more customized analysis, the JGI also participates in publication of …
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User Programs
… accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s …
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A Community Resource for Secondary Metabolite Researchers
The Secondary Metabolism Collaboratory encourages user … growth and reproduction—most organisms produce a set of "secondary metabolites," chemical compounds that often confer … come pre-annotated using multiple commonly used sequence analysis tools is a means of expediting BGC and biosynthesis …
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Programs & Platform Leads
Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, Secondary Metabolites, and DNA Synthesis Science Programs …
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