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Major proliferation of transposable elements shaped the genome of the soybean rust pathogen Phakopsora pachyrhizi
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Characterizing Communities: JGI Announces Latest CSP Portfolio
Proposals aim to sequence and annotate genomes from Antarctica to Africa to … proposals have been accepted from 70 full submissions based on 92 letters of intent. Additionally, 40 percent … interested in learning more about the fungal endophytes of soybean and how they deter two significant pathogens, the …
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Natural Prodcast Episode 7: Ben Shen
Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hello, and welcome back for Episode … develop enabling technologies. ie how to translate the ATGC sequence into discrete small molecules. So, Dan, I’m very … And in DNA is all that the same molecule, just different sequences BEN: The other thing I think about JGI is, really, …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
In honor of the JGI's 25th anniversary in 2022, we have … plant pathogen species, Phytophtora sojae, which imperils soybean harvests. The subsequent comparative analysis of … of millions of trees in California alone. With the genome sequence in hand, the UC team led the charge to develop …
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Community Science Program
… projects of relevance to Department of Energy (DOE)  Mission Areas . Through this program, the DOE aims to advance … is for PIs who have never led a JGI project, and the Functional Genomics call is for projects that translate genomic information into biological function. The  New Investigator and …
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Project Management Office
PMO works with users, JGI scientists and technical staff to onboard users and guide them through the process of working … launching the user’s project. See below for details on each step. … Please review our FAQ in advance of contacting the PMO office.  … Before work can start on any …
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The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes
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JGI Portals
… resource for the broader scientific community and require constant developments to meet the ever-changing demands of … of microbial communities based on their metagenome sequence, in the context of reference isolate genomes … of fungi. Mycocosm enables users to navigate across sequenced fungal genomes, and to conduct comparative and …
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DNA Synthesis Program
… of biofuels, biochemicals and other bioenergy solutions.  The program has been a pioneering effort in functional … Program aims to generate large datasets to explore sequence-function relationships, advancing the discovery of … Science Group supports researchers exploring how to convert sequence into functional assessments. The team has a …
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Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
The Sequence to Function: Applications and Analysis for the Future (SFA²F) meeting brings … from academia, industry, and government organizations for three days of scientific presentation, interactive …
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Jeremy Schmutz
… working for the Stanford Human Genome Center, now the HudsonAlpha Institute for Biotechnology. There he constructed … Bennetzen, JL & Schmutz, J et al. 2012. Reference genome sequence of the model plant Setaria. Nature Biotechnology … J et al. 2010. Genome sequence of the palaeopolyploid soybean. Nature 4637278: 178-183. … Thomson Reuters Highly …
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