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Microsatellite discovery from BAC end sequences and genetic mapping to anchor the soybean physical and genetic maps
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
In honor of the JGI's 25th anniversary in 2022, we have … trace its origins, the researchers engaged the DOE Joint Genome Institute (JGI), with support of the US Department of … plant pathogen species, Phytophtora sojae, which imperils soybean harvests. The subsequent comparative analysis of …
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … and enthusiasts to look deep into more than 100 algal genomes, compare them, and visualize supporting experimental …
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Help from Citrus’ Bitter, Hardier Cousin
The chromosome-scale genome sequence of trifoliate orange yields clues to … never heard of trifoliate orange. Otherwise known as  Poncirus trifoliata , it’s an evolutionary cousin of the  … leaves, a team of researchers sequenced  P. trifoliata ’s genome. Scientists at the US Department of Energy (DOE) …
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FICUS-NERSC/KBASE
The mission of the Joint Genome Institute is to serve the scientific … and readiness to begin work, checking such factors as genome size, polymorphism level, sample quality and …
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Frequently Asked Questions: Proposal Submission
See below for a list of Frequently Asked Questions about our proposal submission process. You can review … on our YouTube channel as well as in this episode of our Genome Insider podcast.  You can also contact … range from raw sequence data to well-annotated assembled genomes to synthesized DNA constructs to metabolomics data, …
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Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network
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Characterizing Communities: JGI Announces Latest CSP Portfolio
Proposals aim to sequence and annotate genomes from Antarctica to Africa to global oceans. Through … proposals have been accepted from 70 full submissions based on 92 letters of intent. Additionally, 40 percent … interested in learning more about the fungal endophytes of soybean and how they deter two significant pathogens, the …
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Publication Policy
The JGI has a strong interest in seeing that the data produced by the … assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators and JGI … be found at the top of the proposal info page on the JGI Genome Portal. You can navigate to the proposal info page …
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Data Ecosystem
… specifically optimized for high-performance computing environments. … KBase is a critical partner in enabling systems … analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to … data on scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and …
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Examples: Successful LOIs & Submissions
Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for User Science calls. These documents have been shared …
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Picking Up Threads of Cotton Genomics
Analysis reveals cotton genome stability across global lineages . Come harvest … darwinii are the others. All of these cotton lineages have genomes approximately 2.3 billion bases or Gigabases (Gb) in …
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