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SoyCSN: Soybean context‐specific network analysis and prediction based on tissue‐specific transcriptome data
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Development of simple sequence repeat markers for the soybean rust fungus, Phakopsora pachyrhizi
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable … trace its origins, the researchers engaged the DOE Joint Genome Institute (JGI), with support of the US Department of … plant pathogen species, Phytophtora sojae, which imperils soybean harvests. The subsequent comparative analysis of …
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High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence
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The transcriptional activator ClrB is crucial for the degradation of soybean hulls and guar gum in Aspergillus niger
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JGI@25: Studying Sorghum’s Survival Skills
… 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable … climate has earned it a place on the JGI’s Flagship Plant Genome roster. Sorghum has an important feature in common … the species. Earlier pan-genomes for other plants, like the soybean relative Glycine max ( 2014 ) and the grass …
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FICUS
… The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique … to request the capabilities and expertise of multiple DOE National User Facilities in one research proposal.  … from a researcher, briefly describing the project motivation, experimental design, capabilities to be used and DOE …
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Partnerships: Myco-Ed
… The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a Course-Based … genomic resources empower students through isolation and genome sequencing of new fungal species.  Students collect … Myco-Ed has:  ~50 lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ …
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Microsatellite discovery from BAC end sequences and genetic mapping to anchor the soybean physical and genetic maps
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Analysis of the genetic diversity of the soybean rust pathogen Phakopsora pachyrhizi reveals two major evolutionary lineages
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Improving the Cacao Genome and Phytozome
… Global chocolate brands can’t exist without cocoa According to the  … will be cocoa for chocolate tomorrow In 2010, a draft first genome of  Theobroma cacao  – the tree that produces cacao … released by a Mars, Inc.-led consortium through the Cacao Genome Database project. The genome sequence was assembled …
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Frequently Asked Questions: Proposal Submission
… You can review successful letters of intent and submissions at the bottom of the page.  … are done using web-based forms.   To view the proposal templates, go to the proposal submission page , login using your JGI account (create one here if you don’t already have an account) and click …
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