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JGI Portals
… all JGI genomic databases and analytical tools for all JGI sequencing projects. In 2021, the JGI launched the Data … access to information regarding genome and metagenome sequencing projects, and their associated metadata, around …
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JGIota: Sequencing Shiitakes with David Hibbett
… that makes shiitake mushrooms special. This week, he and 39 collaborators published a paper tracing how these mushrooms …
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Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system
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MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration
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Danielle Goudeau
Danielle operates the single-cell genomics pipeline for JGI collaborators. This work combines custom flow cytometric … cell sorting, genome amplification, PCR screening, and 16S sequencing. She also develops novel flow cytometry protocols …
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A Grass Model to Help Improve Giant Miscanthus
Lawrence Berkeley National Laboratory (Berkeley Lab), and collaborators across Europe and Asia. CABBI partners include …
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Intrinsic and Extrinsic Programming of Product Chain Length and Release Mode in Fungal Collaborating Iterative Polyketide Synthases
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A Grass Model to Help Improve Giant Miscanthus
Lawrence Berkeley National Laboratory (Berkeley Lab), and collaborators across Europe and Asia. CABBI partners include …
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Natural Prodcast Episode 18: A CSP Primer
… the CSP program, yeah, is a big part of what JGI does with collaborators. So, I think, yeah, I think it would be great … Science program. It used to actually stand for Community Sequencing Program. Also CSP, same acronym. But as JGI, as a … facility, evolved, and as we started to do more than just sequencing, we thought the name community sequencing program …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… samples in from afar, without ever hearing much about the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with names — …
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JGI@25: Studying Sorghum’s Survival Skills
… timeline of sorghum projects at the JGI: 2009: JGI and collaborators use whole-genome shotgun sequencing to analyze the 730-megabase Sorghum bicolor (L.) … it with over 50 other diverse sorghum genomes. Deep sequencing and genetic linkage analysis improve the genome’s …
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Single Cell Research Group
… to only three phyla. The Woyke group uses single-cell sequencing as a means to begin filling this gap. A primary … of interest, prior to and in conjunction with whole genome sequencing. … Jean-Marie Volland: Assistant Professor, UC … M., Varghese N. J., Paez-Espino D., Hungate project, collaborators Perry R., Henderson G., Creevey C. J., …
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