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Natural Prodcast Episode 15: Katherine Duncan
… the idea of taking all the different natural products data that there is and putting things, coalescing them, so … basic questions that we can only really address with bigger data sets and integrated data sets. So yeah, in terms of, I guess, fields of science, …
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User Programs
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Natural Prodcast Episode 7: Ben Shen
… pitch them in two different categories. One is a geographic distribution. So they were collected from 108 … So now, if you have, say, a huge library of books, with a unified language, but then you have to have an index. You … so everybody, readers of the library, can come to our databases and look for the specific information they are …
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Microbial Program
The program provides high-quality, large-scale genomic data to advance microbial research that drives sustainable … The program aims to generate high-quality genomic datasets, particularly for uncultivated microorganisms, by … microbial lifestyles using AI-driven analysis of such datasets. The program also collaborates with isolate …
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An orthogonal metabolic framework for one-carbon utilization
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An Automated Tool for Assessing Virus Data Quality
… can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing … is challenging and often results in highly fragmented data, which limits the ability of researchers to accurately … to develop guidelines and best practices for defining virus data quality. Summary Characterizing viral genome fragments …
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FICUS-NERSC/KBASE
… of Science through high performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( KBase ) integrates systems biology data and tools to help predict biological function.   To … NERSC and KBase issued a call for proposals in biological data science as part of the FICUS initiative. Proposals …
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Natural Prodcast Episode 8: Eric Schmidt
… where everyone’s working in their own space to a common framework where we hold the problems in common. DAN:  Yeah, … proteins interact with each other. There’s a lot of leading data from excellent groups about specific interaction …
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Zhong Wang
… scaling up genomics analysis to peta-bases, and enabling data-driven science. This is a group of computational … scientists, the Wang group has developed customized data analyses and software to enable “grand-scale” … assembly, Hadoop based on sequence analysis framework, etc. For example, this group was responsible for …
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JGI@25: Using Team Science to Build Communities Around Data
… over 180 organizations in 29 U.S. states and 35 countries. (Graphic: Neil Byers) The JGI launched the 1000 Fungal … on Phytozome  … Filling in the Plant Tree of Life … Fungal Dataset … Plant Datasets … Genome Insider …
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2024 Progress Report
Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area … we provide advanced genomic capabilities, large-scale data, and professional expertise to support the global … We closed our 2018 Strategic Plan at the end of September, 2023 with over 90% of our two- and five-year milestones  …
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A Viral Ecogenomics Framework To Uncover the Secrets of Nature’s “Microbe Whisperers”
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