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Natural Prodcast Episode 17: Cassandra Quave
… early stage drug discovery in general, and a possible data-driven future for plant natural products. Happy … when I was doing my dissertation research, I gather data from all over this area of Southern Italy and in … on the future of what you do then? And are there ways to do data-driven approaches at some point like that in the …
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Webinars on Offerings & Capabilities
… . You can find additional webinars covering how to use our data portals here.  …
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Open Frameworks Training the Next Generation of Scientists
… and skill development while curating reusable microbiome data. Undergraduate educators are partnering with the JGI … in laboratory techniques through hands-on experiments and data analysis. Starting with isolating and identifying fungi … to help produce novel fungal genomes. They manually curate data to connect to the newly generated Myco-Ed reference …
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Natural Prodcast Episode 18: A CSP Primer
… algal genomes, a lot of effort goes into generating these data sets. There’s a lot of manual work in terms of the … the assembly, the curation, QC, annotation of these data sets. For our eukaryotes, in addition to sequencing the … pipelines for that. So again, we don’t just give them the data output, but we tell them which genes may be affected by …
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Natural Prodcast Episode 7: Ben Shen
… pitch them in two different categories. One is a geographic distribution. So they were collected from 108 … So now, if you have, say, a huge library of books, with a unified language, but then you have to have an index. You … so everybody, readers of the library, can come to our databases and look for the specific information they are …
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Natural Prodcast Episode 3: The Primer, Part 3
… probably been since the last decade. We have a lot more data. Obviously, there’s been a lot of sequencing going on, … we’ve already sequenced. So, you know, I’ve got a large database of millions of different biosynthetic gene …
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A framework for human microbiome research
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User Programs
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… with excitement and determination as they came onsite. From data carpentry to science communications, their schedules … Stamatis, Porting XML/Python Based Quality Control to Database/Java Based Process in Gold Sandra Hernandez … and work at the command line, manipulating huge amounts of data. I was excited to work on fungal genomics and the fact …
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Metabolomics Program
… molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, … program integrates cutting-edge metabolomics with genomic data to gain insights into how small molecules function … imaged and sampled.  Combining collected metabolomics data with genomics, transcriptomics, imaging, and other data …
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Natural Prodcast Episode 12: Nadine Ziemert
… much I actually can learn just by really digging into the data and understanding what’s going on there. And now, … of searching the internet, searching literature, and making databases. Because that’s what I noticed is really a … lot of information out there is not easily searchable or in databases, where you can easily get information. Usually, in …
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An orthogonal metabolic framework for one-carbon utilization
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