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Cocultivation of Anaerobic Fungi with Rumen Bacteria Establishes an Antagonistic Relationship
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Occurrence and expression of genes encoding methyl-compound production in rumen bacteria
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Feature selection and causal analysis for microbiome studies in the presence of confounding using standardization
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Natural Prodcast Episode 8: Eric Schmidt
… 8 of Natural Prodcast. This week, we have our conversation with Professor Eric Schmidt, from the University of Utah. … and love the idea of working on harder organisms, with the kinds of challenges that usually lead to surprises … rich and underappreciated. And we’ve worked both with the microbiome. So, with symbiotic bacteria that live in animals …
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Aerobic bacterial methane synthesis
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Cataloging the Microbes that Manage the Health of River Systems
… of water help regulate. However, the microbes also interact with compounds like fertilizers and microplastics that might … and agriculture. Understanding the compositions of river microbiomes—who the core microbes are and what they do—can … 3.8 trillion bases or Terabases of sequencing data, along with geochemical and geospatial measurements collected at …
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Comparative Genomics of Rumen Butyrivibrio spp. Uncovers a Continuum of Polysaccharide-Degrading Capabilities
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… , who was recently selected as the 2025 recipient of the Microbiome Data Prize by the American Society for Microbiology (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the … of the virus and plasmid workflows for the National Microbiome Data Collaborative.  This award recognizes …
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Nikos Kyrpides
Genomics Inc. in Chicago, IL. He did his postdoctoral studies with Carl Woese at the University of Illinois at … National Laboratory. Dr. Kyrpides’ research focus on Microbiome Research with an emphasis on Microbiome Data …
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Environmental Genomics Group
… lineages, and reconstruct metabolic properties encoded within those genomes. Our aim is to more fully capture … Team    … Nayfach S et al.  A Genomic Catalog of Earth’s Microbiomes .  Nature Biotechnology . 2020 Nov 9. Vyshenska, … Nayfach S et al.  A Genomic Catalog of Earth’s Microbiomes .  Nature Biotechnology . 2020 Nov 9. doi: …
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Partnerships: Adopt-A-Genome
… faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the … public datasets.  … The Integrated Microbial Genomes & Microbiomes system ( IMG/M ) supports the annotation, …
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Comparative metagenomics of hydrocarbon and methane seeps of the Gulf of Mexico
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