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Frequently Asked Questions: Project Management
… You can visit the Products & Offerings section of our website for more details, including a downloadable pdf of products categorized by Science Program.  … The majority of JGI projects come from the user community. Find out about JGI’s calls for proposals , …
Learn more
Products
… Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … as well as target cycle times from sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products below. In …
Learn more
Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … those transcripts, so I hope somebody’s going to find them useful! DAN: Among many other things, Ben is maybe best … so everybody, readers of the library, can come to our databases and look for the specific information they are …
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CSP Large Scale Call
… The Community Science Program Large Scale call is focused on genomic science projects that address biological … and predictive biology, modeling and biodesign — questions of relevance to DOE’s Biological and Environmental Research … for scientific merit, DOE mission relevance, proposed data usage by the applicant/community, and track record of …
Learn more
CSP New Investigator Call
… initiatives new to the JGI. Projects must be independent of ongoing JGI proposals, and lead PIs cannot have been lead … FICUS proposal.   Competitive projects will provide pilot data to assess feasibility of a novel approach or form the … of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. …
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DOE Metrics
… (Trillions) Operating Hours Goal  Actual Total*   Actual % of Goal   Goal (hours)**   Actual Total   Actual % Goal   FY … hours.   FY 2025 DOE Metrics There were 2,627 unique* JGI users in FY2025 , which includes Principal Investigators … capabilities to analyze complex genomic or metagenomic datasets. [Download PDF] Q3 – Report on new computational …
Learn more
How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI. … on accessing sample-level reports and tracking statuses.  Please follow the steps outlined below. Click the … of a successful sequencing project. It is imperative that users properly assess DNA or RNA mass prior to shipment to …
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Metabolomics
… functional genome annotation, improves understanding of the role small molecules play in diverse biological … systems, sheds light on nutrient cycling, and leads to the discovery of new molecules and pathways. The JGI … liquid chromatography mass spectrometry (LC-MS) based methods in combination with advanced computational analysis. …
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User Executive Committee Charter
… The JGI User Executive Committee (UEC) represents the JGI user … users and their science including technical capabilities offered, proposal review procedures, and the annual user meeting. The UEC also acts as a liaison to the user community and the broader scientific community …
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Fungal & Algal Program
… The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, environmental … and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the biological … and advanced genomic analysis to explore the rich diversity of fungi and algae. These organisms play a critical role in …
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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well … Genomics, and Facilities Integrating Collaborations for User Science calls. These documents have been shared with … Linking lignin engineering to drought stress resilience: RNA-seq and metabolomic …
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Secondary Metabolites Program
…   The JGI’s Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and … for fundamental growth, provide critical advantages to the organisms producing them, and are often involved in … their synthesis. The Secondary Metabolites Program offers users extensive genomics, biodesign and metabolomics …
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