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Natural Prodcast Episode 6: Marc Chevrette
… that I wanted to include it. This is a conversation with Marc Chevrette. Marc is a postdoc in Jo Handelsman’s … in those two fields and the ability to process samples at scale. So, lots of samples. ALISON: Yeah, how many samples … offer protection through chemistry. We’ve done really fine-scale sampling in my research and some of the research …
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Scaling metagenome sequence assembly with probabilistic de Bruijn graphs
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A Community Resource for Secondary Metabolite Researchers
… more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence … and secondary metabolites information from isolate and metagenome data.   The SMC ( smc.jgi.doe.gov ) is designed … the most comprehensive BGC database available at 10X the scale of the closest comparable database, and has the …
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User Support
… a new login service, requiring the use of an ORCID account with two-factor authentication enabled to log in. Check our … world-class science. DOE JGI Project Managers collaborate with users to develop project requirements, define the scope … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …
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Terabase-Scale Coassembly of a Tropical Soil Microbiome
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Examples: Successful LOIs & Submissions
… Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to our CSP New … for User Science calls. These documents have been shared with permission from the PIs who drafted them.  … Characterization of simplified soil communities with high and low carbon use efficiency across differing …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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Natural Prodcast Episode 8: Eric Schmidt
… 8 of Natural Prodcast. This week, we have our conversation with Professor Eric Schmidt, from the University of Utah. … the end, we took an approach that was kind of a simplified metagenome sequencing approach to pick this system apart.  … we ended up doing was pursuing with Jacques Ravel, at TIGR, metagenome sequencing, which was very early days for that …
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Emiley Eloe-Fadrosh
… Scripps Institution of Oceanography. She stepped into the Metagenome Program Lead position in 2017. She also leads the … Microbiome Data Collaborative (NMDC). Prospective users with questions on how to partner with the Metagenome Science Program on their research are encouraged …
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Meanders as a scaling motif for understanding of floodplain soil microbiome and biogeochemical potential at the watershed scale
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Natural Prodcast Episode 22: Alison Narayan
… earlier this year. And today we have our conversation with Professor Alison Narayan, from the University of … Sure. ALISON NARAYAN: And so we usually start on small scale in the lab. So we’ll run things in like little … when you’re scaling up, you know? How are you going to scale up your reaction? I’ll never forget one day I walked …
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Reference-free structural variant detection in microbiomes via long-read co-assembly graphs.
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