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JGI Portals
… constant developments to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial … … The IMG/M system serves as a community resource for comparative analysis and annotation of all publicly … access, visualization, and analysis tools for comparative genomics of fungi. Mycocosm enables users to navigate across …
Learn more
Data Ecosystem
To expand access to integrated data, improve tools and … cohesive data standards, the JGI partners with a number of facilities.  … Through its partnership with NERSC and the … seamlessly access and analyze data on scales ranging from single genes and individual genomes to metagenomes to …
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Institutional User Agreements
Every approved proposal starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our Community … submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for User …
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CalTeach
CalTeach is a program for undergraduate majors interested in developing a deep understanding of STEM teaching & learning. Their coursework focuses on …
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Single-cell genomics reveal low recombination frequencies in freshwater bacteria of the SAR11 clade
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Partnerships Development Team
Developed in 2017, the PDT was established in part to help better-connect industry to … works closely with the Berkeley Lab Intellectual Property Office to facilitate these new interactions.  The PDT … genome engineering (CRAGE), which offers single-step genomic integration and prototyping of complex …
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Natural Prodcast Episode 6: Marc Chevrette
… by watching Amanda Hurley’s presentation from the 2019 JGI Genomics of Energy & Environment Meeting.] He’s also a … in putting antibiotics together, getting them out of the cell letting them do their dirty work. So that’s one arm. … to learn more about Cameron Currie’s metagenomics research, enabled in part by JGI’s Community Science Program.] So …
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Natural Prodcast Episode 21: Elizabeth Parkinson
So chemicals are their way of talking. You bring up an excellent point though, and I think this is an area that is a … been shown today is it's more a quorum sensing within a single species. DAN: Within a species. Genus? BETSY … based on what component they might be interested in like genomics, metabolomics, just basic chemistry, natural …
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Metabolomics Program
The JGI’s Metabolomics Program works to uncover the roles of small … and ecosystems at the molecular level. Integrating genomics with metabolomics fuels the discovery  of novel …
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Natural Prodcast Episode 2: The Primer, Part 2
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … that – I want to say like lipid bilayer, you know, in the cell.  DAN: It depends on lifestyle. So there are lots of … think of bacteria. You think of bacteria as sort of these single celled organisms, kind of all over. But these kinds …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are … by combining a study of microbial communities (metagenomics) and a chemical labelling approach. The Impact … nitrogen, but the viruses that infect Altiarchaea cause the cells to burst. This action triggers subsurface carbon …
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