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Offerings & Capabilities
… science by generating data in three overarching categories: Sequencing, Synthesis and Metabolomics. Strong internal …
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User Support Analysis Group
User Support Analysis group provides computational analysis for new technology development and JGI user science projects. We perform analysis for diverse experiment types, with main focus … development of automated analysis pipelines for standard sequencing products performed at scale. Our group also …
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Nandita Nath
… to improve genome recovery from single cells and to build sequencing libraries from minimal DNA input without amplification. …
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Environmental Genomics Group
… approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop … approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …
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Viral Genomics Group
… overview and major challenges of host prediction methods for uncultivated phages.  Current Opinion in Virology .  49 … 4 , 1895–1906 Roux, S. et al. (2019) Minimum Information about an Uncultivated Virus Genome (MIUViG).  … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …
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Mission
… and resources. Our vision is to lead genomic innovation for a sustainable bioeconomy. ALL PROPOSALS must support the … Livermore National Laboratory and the HudsonAlpha Institute for Biotechnology . We are located in the Integrative … of Energy.   The JGI provides integrated high-throughput sequencing, DNA design and synthesis, metabolomics and …
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Danielle Goudeau
Danielle operates the single-cell genomics pipeline for JGI collaborators. This work combines custom flow cytometric analysis, cell sorting, genome amplification, PCR screening, and 16S sequencing. She also develops novel flow cytometry protocols …
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Natural Prodcast Episode 20: Brian Bachmann
I wanted to tell you about in this introduction. First and foremost, our interview this week is with Professor Brian … which was a very early genome mining company, back when DNA sequencing of natural product pathways was hard and … Natural Products meeting and it’s time to get this podcast rolling again. I’ve committed to the JGI Comms team, and, …
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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Natural Prodcast Episode 3: The Primer, Part 3
… it’s a little hard to find in print, but we live in the information age and the ebook version is available at most … that I think we’re doing here. If you have suggestions for others feel free to let me know by emailing … and the 90s. And so we started to be able to explore DNA sequencing and actually get to the DNA sequence – sequences …
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Natural Prodcast Episode 18: A CSP Primer
It’s been a while, but Natural Prodcast is back again for another round of episodes. If you stick around for the … Science program. It used to actually stand for Community Sequencing Program. Also CSP, same acronym. But as JGI, as a … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
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Integrated analysis of homozygous deletions, focal amplifications, and sequence alterations in breast and colorectal cancers
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