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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop new algorithms, models and tools in support … critical requirements for amplifying the JGI’s impact. Data generated from a single investment will be reused for …
Learn more
Examples: Successful LOIs & Submissions
… Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to our CSP New … Linking lignin engineering to drought stress resilience: RNA-seq and metabolomic insights in lignin biosynthetic pathway … Elucidating Sphagnum microbiome genetic interactions for improved growth at elevated …
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Fungal & Algal Program
… environmental sustainability, and bioproducts. By sequencing and analyzing the genomes of these organisms, the … and biogeochemistry. The program’s focus is on large-scale sequencing efforts that survey the vast phylogenetic and ecological diversity of fungi and algae, …
Learn more
A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… To researchers searching for sequences of RNA viruses in large data sets, their work may be akin to finding a single … than 5,000 data sets of RNA sequences (metatranscriptomes) generated from diverse environmental samples around the … viruses,” said Simon Roux , a JGI scientist and one of the project co-leads. “But same as DNA viruses, RNA viruses …
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Plant Microbial Interactions Group
… including single-cell and spatial transcriptomics barcode-based genetics (RB-TnSeq), and computational genomics to better understand the … strains, whereby they can modulate host metabolism, gene expression and phenotype. We have recently identified … We will eventually construct a bioenergy plant single-cell atlas comprising Sorghum, Switchgrass, and Brachypodium …
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Natural Prodcast Episode 6: Marc Chevrette
… among lots of other things, he works on the Tiny Earth project, which you’ll hear him describe. [ Go here to learn … that can’t live without their host. They have no extra genes hanging around, they still dedicate 20-30% of their … you for that insight. DAN: So I suppose, coming up with large collections of new microbes and new activities, feeds …
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Who We Are
… Systems Biology Knowledgebase and the National Microbiome Data Collective.    … and other relevant organisms. We provide access to large-scale datasets and analysis tools for genomes, metagenomes, … the completion of DOE’s commitment to the Human Genome Project , the University of California, which manages …
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Strain Engineering
… The focus of this group, in recent years, has been to bring generalizable technologies to bacteria, yeasts and algae … strains represent an additional phase of user-accessible project types, in which DNA-based molecules can be chromosomally integrated into a …
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Natural Prodcast Episode 22: Alison Narayan
… enzymology. So, we talked about her JGI DNA synthesis project to explore the chemical capabilities of flavin … could have arisen from. DAN UDWARY: OK, so sort of a phylogenetic reconstruction kind of a thing. ALISON NARAYAN: … Sure. ALISON NARAYAN: And so we usually start on small scale in the lab. So we’ll run things in like little …
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Natural Prodcast Episode 4: Nancy Keller
… After I got my undergraduate degree, which was in general biology, I joined the Peace Corps. And when I was … anything to use natural products necessarily. Fungi are large. They’re microbes, but they’re large microbes. And … so, so cheap to sequence. Right now, for our particular projects, we’re not doing that right now, but we might. I …
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… scientists selected for our 2026 Community Science Program Large Scale call. This portfolio accelerates bioenergy … organisms and ecosystems. Scientists are engineering next-generation feedstocks through CRISPR-edited poplars with … biomass processing. This year’s portfolio also includes a project led by the National Ecological Observatory Network …
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Natural Prodcast Episode 15: Katherine Duncan
… I was imagining some massive contraption for amplifying genes. I wasn’t really sure what actinobacteria were. Dan … of North America. So then I came back and I worked on an EU project, the Scottish Association for Marine Science. And … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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