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Frequently Asked Questions: Project Management
Christa Pennacchio   … You can visit the Products & Offerings section of our website for more details, including … by Science Program.  … The majority of JGI projects come from the user community. Find out about JGI’s calls for … for individuals associated with your proposal. Find our Publications Policy on our Data Policy & Support page.    … …
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Natural Prodcast Episode 1: The Primer, Part 1
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … Laboratory. Being a User Facility means that scientists from all over the world bring us big problems related to … from is, from the bark of the yew tree, is where it was originally discovered. And so that sounds great. There’s a …
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Computationally Classifying Fungal Lifestyles
… genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that … class  Dothideomycetes includes fungi that obtain nutrients from decaying organic matter (saprobes), and many plant … Facility, is supported under Contract No. DE-AC02-05CH11231. The work was also supported by the NSF grants  …
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Frequently Asked Questions: Proposal Submission
See below for a list of Frequently Asked Questions about our proposal submission … are open to both domestic and international applicants from any institution type and at any career stage. … proposals are subject to JGI policies on Data Release and Publication .   Except for applicants to the CSP New …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … turned out to be a mixture of genetic material with various origins, ranging from fungi, plants to bacteria. Back in …
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Natural Prodcast Episode 17: Cassandra Quave
Prodcast episode 17. The guest we have this week is Professor Cassandra Quave from Emory University, with joint … everywhere now. But was there any reward to the people that originally discovered how coffee could be used?  The same … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as …
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Secondary Metabolites Program
Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and … interactions with their environments and with each other, from defending against predators to aiding in symbiotic … factors and determine their binding sites across multiple genomes. Computational prediction of heterologous …
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Natural Prodcast Episode 12: Nadine Ziemert
… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … Prodcast. And it’s our conversation with Nadine Ziemert from the University of Tübingen in Germany. Like me, she’s a … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …
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User Support
The JGI Project Management Office carries out a number of activities to facilitate … specific milestones, either by automated emails or emails from your Project Manager. Your Project Manager will also … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …
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Tracking the Origins of Methane-Producing Microbes
… archaea are estimated to produce 500 million tons of methane a year, which is over half the total global … user facility, report the discovery of a novel archaeum from a hot spring that has the genetic machinery to perform … other previously discovered genomes. When they analyzed the reconstructed metabolisms, they found that one of the MAGs …
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Evolution of zygomycete secretomes and the origins of terrestrial fungal ecologies
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … to Actinobacteria , we hope the analysis of the sample origins of novel lineages elicits interest in cultivation … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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