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Natural Prodcast Episode 2: The Primer, Part 2
… without having listened to the first part, you might be a little lost, and I’d suggest you go back and check the … metabolites. I kind of inferred through the stories I told you about geosmin, which is a bacterial sacred … notable. We are still in – not an early stage. I think we can identify most secondary metabolism pathways now, but …
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FICUS-NERSC/KBASE
Reviewers consider technical feasibility and readiness to begin work, checking such factors as genome size, … with JGI’s data release policy.  Interactions with applicants and others who might be interested in the project are … more customized analysis, the JGI also participates in publication of results. … Submission … More on Sequencing …
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Mission
… sustainable bioeconomy. ALL PROPOSALS must support the DOE/BER Mission Areas we serve, see below.  … The U.S. … Creek, California, to consolidate activities. The significant economies of scale achieved in doing so enabled the JGI … of Science. In December 2019, the JGI relocated to the newly-built Integrative Genomics Building (IGB), a home it …
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Frequently Asked Questions: Project Management
Metabolomics projects: Christa Pennacchio   … You can visit the Products & Offerings section of our website … FAQ .  … The “User” signing the JGI User Agreement will be an authorized representative from your institution … for individuals associated with your proposal. Find our Publications Policy on our Data Policy & Support page.    … …
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Natural Prodcast Episode 21: Elizabeth Parkinson
Prodcast. I did it. I’m keeping to my schedule. This should be coming out on the first Thursday of the month, just like … stuff, and I hope you enjoy it. And just to remind you, you can get transcripts, and show notes with links to papers … Bill does it all. A lot of people I think-- well, maybe I'm older, but-- [LAUGHS] I feel like a lot of people hedge …
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Sequencing Submission Requirements for DNA Synthesis
… following items: … Sequence files for all constructs should be emailed to  Miranda Harmon-Smith, Synthetic Biology …
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CSP Functional Genomics
… ‘omics capabilities to enhance understanding of gene and genome function, particularly those not readily achievable … expertise available at the JGI. Proposals to this call may be submitted to the JGI at any time using a simple web-based … DOE mission relevance , proposed data usage by the applicant/community, and track record of the applicant.  Learn …
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Project Management Office
The JGI Project Management Office carries out a number of activities to facilitate world-class science. PMO … FAQ in advance of contacting the PMO office.  … Before work can start on any approved proposal – including the submission of samples for sequencing, or the submission of sequencing data for …
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DOE Metrics
Goal = 91 days; Actual Operation = 24 days due to significant sequencer downtime related to the shelter-in-place. ††† … plan in response to the pandemic.   FY 2019 Number of Unique Users There were 1,933 unique* JGI users in … available hours. Other DOE Quarterly Metrics Q1 – Report on new computational developments for improving microbial, …
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Viral Genomics Group
Microbes drive critical ecosystem functions and affect global … and Roux, S. (2021) Extreme dimensions — how big (or small) can tailed phages be?  Nature Reviews Microbiology.   19 , … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …
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FICUS Overview
A Letter of Intent is required. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s funding of the … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …
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IMG Group
… data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The … orthologous genomic regions (Alignment fraction, AF) have been computed for nearly 28,000 bacterial and archaeal … 326 genomes. Through the analysis of cliques, it has also become possible to identify speciation events within …
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