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Frequently Asked Questions: Project Management
Eukaryotic projects: Kerrie Barry or Vivian Ng Prokaryotic projects: Tijana Glavina del Rio , … date of sample preparation and anticipated shipment. Based on that date, the project manager may then schedule … for individuals associated with your proposal. Find our Publications Policy on our Data Policy & Support page.    … …
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Single Cell Research Group
… effort is targeted at environmental cells that are from candidate phyla, major branches in the phylogenetic tree … an era of ‘homology creep’, function prediction as purely based on annotation may not be sufficient. A more recent … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …
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Natural Prodcast Episode 14: Nigel Mouncey
… … DAN: Hello, everyone, and Welcome back for Episode 14 of … really functional genomics. And there’s a lot of sequencing based approaches, of course, now that we can use to figure … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …
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Secondary Metabolites Program
… of secondary metabolites across bacteria, fungi, algae and plants. These molecules, which are not essential for … roles in the environment, can unlock new avenues for bio-based products and bioenergy crop enhancement. The program … The Secondary Metabolites Program offers users extensive genomics, DNA synthesis and metabolomics capabilities to …
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Natural Prodcast Episode 18: A CSP Primer
… … DAN UDWARY: It’s been a while, but Natural Prodcast is back … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we … really they’re asked by us to just review these proposals based on what’s uploaded, right? Don’t read between the …
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Natural Prodcast Episode 19: Bill Fenical
… … DAN UDWARY: Hey, everyone. I’ve got a great episode for you … really, all over the world. We used ships. We used land-based marine labs. We wrote cooperative grants with people … chemistry and to really put the chemistry into the ecological experimental protocols. So that took about 15 …
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Metabolomics
… at the JGI by identifying the actual molecules present in an environment that influence system behavior.  Through this identification, metabolomics enables functional genome annotation, improves understanding of the role small … advanced liquid chromatography mass spectrometry (LC-MS) based methods in combination with advanced computational …
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Natural Prodcast Episode 3: The Primer, Part 3
… … DAN: You’re listening to the US Department of Energy Joint … to the market. And we get to say that six of those are based on natural product structures.  DAN: One of the things … of biology. You know, I’ve personally been able to work in genomics, in protein structure, in synthetic biology, …
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Microbiome Data Science Team
… a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential growth of DNA … EA, et al. (2016) Metagenomics uncovers gaps in amplicon-based detection of microbial diversity.  Nature Microbiol . … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …
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DNA Synthesis Program
The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the … The program has been a pioneering effort in functional genomics since 2012, with a focus on addressing critical … aligning with the DOE's vision for a sustainable, bio-based economy. … Genome to Enzymes and Pathways focuses on …
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Synthetic Biology Lab
… lab is divided into a DNA synthesis production group and a synthetic biology applications group. The DNA … of throughput. We also develop methods for efficient QA/QC based on next-generation sequencing technologies including … in:  characterizing novel enzymatic activities using phylogenomic driven approaches, and understanding the design …
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FICUS-NERSC/KBASE
… community as a user facility pioneering functional genomics to solve the most relevant bioenergy and environmental problems.  The mission of … more customized analysis, the JGI also participates in publication of results. … Submission … More on Sequencing …
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