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FICUS Overview
… for User Science (FICUS) initiative was established in 2014 to encourage and enable researchers to more easily … There is no cost to the user and no granting of funds. All data is made publicly available in accordance with  JGI’s … provides customized analysis, the JGI also participates in publication of results. …
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Frequently Asked Questions: Proposal Submission
… successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call link to see specific details including project types supported, sample/capacity limits, and instructions.  Many … proposals are subject to JGI policies on Data Release and Publication .   Except for applicants to the CSP New …
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Partners
… and develops others providing complementary expertise to advance the science and serve as impact multipliers . The … Energy Research Scientific Computing Center (NERSC) and data infrastructure projects—the DOE Systems Biology … (NMDC)—to provide access to datasets, workflows, and tools to seamlessly expand data functionality. Close …
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Natural Prodcast Episode 17: Cassandra Quave
… the convention went– since the protocol went into force in 2014. There’s now a website that has a lot of resources that … offered through the National Academies of Sciences, it’s supported also by USAID. And it’s basically a mechanism … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … found in Yu et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2004, 1253–1262, 70:3 ALISON TAKEMURA: And so did you … little vague to me. What do you mean by putting a bunch of tools in one package? DAN UDWARY: Oh, sure. So if I wanted …
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Mission
… provide advanced genomic capabilities, large-scale AI-ready data and professional expertise to support the global research community in studies of … and environmental systems. We optimize our service to the community through responsibly managing our people and …
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Special Initiatives & Programs
… and products . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA synthesis requests, the minimum is 100 kb, and for metabolomics, at least 22 samples are required. If your proposed request falls … using the U.S. Culture Collection Network (USCCN) to nominate their strains for sequencing, as long as they …
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific community as a user facility … of Science through high performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( KBase ) integrates systems biology data and tools to help predict biological function.   To jointly …
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Promoting the Power of Viral Metagenomics
… published in the journal  Annual Review of Biomedical Data Science . The following guest piece was written by Call, a postdoctoral fellow in the JGI Microbiome Data Science Group led by Kyrpides. Since early 2020, people all over the world have been forced to confront …
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Offerings & Capabilities
… Technologies department is   ensuring users have access to cutting-edge capabilities to help advance their science by generating data in three overarching categories: DNA Sequencing , Biodesign and Metabolomics .  Many users …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental tendencies The Science The  Metagenome … activity in microbiomes. The initial analysis used over 12,000 metagenomes from diverse environments and grouped … Neighbor (KNN) Classification. LDA is a supervised data compression technique that was used to take the …
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Natural Prodcast Episode 14: Nigel Mouncey
… screening platform where we’d look at 10,000, 15,000, 20,000 mutants a week. We started doing a whole bunch of … using these together along with all of our computational tools to really build out much more of an integrative … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …
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